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  5. TPCG02620.1

TPCG02620.1


Description : Ribosomal protein S5, C-terminal; Ribosomal protein S5, N-terminal [Interproscan].


Gene families : OG_01_0000781 (OrthoFinder) Phylogenetic Tree(s): OG0000781_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: TPCG02620.1
Cluster HCCA: Cluster_14

Target Alias Description ECC score Gene Family Method Actions
Cre09.g407100 30780731 No description available 0.06 OrthoFinder
Cre16.g659950 30778100, PRPS5 Protein biosynthesis.organelle translation... 0.05 OrthoFinder
Cz12g28110.t1 No alias Ribosomal protein S5, C-terminal; Ribosomal protein S5,... 0.07 OrthoFinder
OT_15G00990.1 No alias Ribosomal protein S5, C-terminal; Ribosomal protein S5,... 0.08 OrthoFinder
Sro1022_g232380.1 Contig2862.g22952 Protein S5 0.06 OrthoFinder
Sro51_chlor_g029640.1 Rps5 Rps5 0.21 OrthoFinder
Transcript_contig_54625 54625 Ribosomal protein S5, C-terminal; Ribosomal protein S5,... 0.02 OrthoFinder
Vocar.0029s0076.1 32887394 Hypothetical protein 0.05 OrthoFinder
XM_002506775.1 MICPUN_92603, 92603 Ribosomal protein S5, N-terminal; Ribosomal protein S5,... 0.12 OrthoFinder
XM_003061002.1 MicpuC2_48160, 48160 Ribosomal protein S5, C-terminal; Ribosomal protein S5,... 0.05 OrthoFinder
lcl|LHPG02000012.1_cds_PRW44968.1_1935 PRW44968 30S ribosomal S5 0.04 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003678 DNA helicase activity IEP Enrichment
MF GO:0003697 single-stranded DNA binding IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
CC GO:0005622 intracellular anatomical structure IEP Enrichment
BP GO:0008104 protein localization IEP Enrichment
CC GO:0009521 photosystem IEP Enrichment
CC GO:0009522 photosystem I IEP Enrichment
CC GO:0009523 photosystem II IEP Enrichment
CC GO:0009538 photosystem I reaction center IEP Enrichment
CC GO:0009579 thylakoid IEP Enrichment
CC GO:0009654 photosystem II oxygen evolving complex IEP Enrichment
BP GO:0015031 protein transport IEP Enrichment
BP GO:0015979 photosynthesis IEP Enrichment
CC GO:0016020 membrane IEP Enrichment
BP GO:0016226 iron-sulfur cluster assembly IEP Enrichment
BP GO:0017038 protein import IEP Enrichment
MF GO:0019843 rRNA binding IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
BP GO:0031163 metallo-sulfur cluster assembly IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
BP GO:0033036 macromolecule localization IEP Enrichment
BP GO:0045184 establishment of protein localization IEP Enrichment
BP GO:0071702 organic substance transport IEP Enrichment
BP GO:0071705 nitrogen compound transport IEP Enrichment
CC GO:0098796 membrane protein complex IEP Enrichment
InterPro domains Description Start Stop
IPR005324 Ribosomal_S5_C 103 173
IPR013810 Ribosomal_S5_N 27 90
No external refs found!