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  5. TPCG02600.1

TPCG02600.1


Description : Ribosomal protein L6, alpha-beta domain [Interproscan].


Gene families : OG_01_0002270 (OrthoFinder) Phylogenetic Tree(s): OG0002270_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: TPCG02600.1
Cluster HCCA: Cluster_14

Target Alias Description ECC score Gene Family Method Actions
Cre09.g415950 30781212, PRPL6 Protein biosynthesis.organelle translation... 0.09 OrthoFinder
Cz10g03060.t1 No alias Ribosomal protein L6, alpha-beta domain [Interproscan]. 0.06 OrthoFinder
Dusal.0148s00001.1 33200410 Ribosomal protein L6, alpha-beta domain [Interproscan]. 0.03 OrthoFinder
OT_15G02320.1 No alias Ribosomal protein L6, alpha-beta domain [Interproscan]. 0.06 OrthoFinder
Sro51_chlor_g029620.1 Rpl6 Rpl6 0.17 OrthoFinder
Sro884_mit_g215700.1 Rpl6 Rpl6 0.14 OrthoFinder
Vocar.0011s0204.1 32895344 Ribosomal protein L6, alpha-beta domain [Interproscan]. 0.03 OrthoFinder
XM_002505251.1 MICPUN_92039, 92039 Ribosomal protein L6, alpha-beta domain [Interproscan]. 0.09 OrthoFinder
XM_003060275.1 MicpuC2_45705, 45705 Ribosomal protein L6, alpha-beta domain [Interproscan]. 0.04 OrthoFinder
lcl|BLLF01001465.1_cds_GFH19448.1_13925 HaLaN_16394, GFH19448 Ribosomal protein L6, alpha-beta domain [Interproscan]. 0.04 OrthoFinder
lcl|LHPG02000015.1_cds_PRW34061.1_2806 PRW34061 50S ribosomal chloroplastic 0.04 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8494742.1_3272 KAA8494742 50S ribosomal protein L6 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
MF GO:0019843 rRNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Enrichment
MF GO:0003678 DNA helicase activity IEP Enrichment
MF GO:0003697 single-stranded DNA binding IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
CC GO:0005622 intracellular anatomical structure IEP Enrichment
BP GO:0006810 transport IEP Enrichment
BP GO:0006812 cation transport IEP Enrichment
BP GO:0008104 protein localization IEP Enrichment
MF GO:0008320 protein transmembrane transporter activity IEP Enrichment
BP GO:0009306 protein secretion IEP Enrichment
CC GO:0009521 photosystem IEP Enrichment
CC GO:0009579 thylakoid IEP Enrichment
BP GO:0009767 photosynthetic electron transport chain IEP Enrichment
BP GO:0015031 protein transport IEP Enrichment
MF GO:0015450 P-P-bond-hydrolysis-driven protein transmembrane transporter activity IEP Enrichment
BP GO:0015979 photosynthesis IEP Enrichment
CC GO:0016020 membrane IEP Enrichment
CC GO:0016021 integral component of membrane IEP Enrichment
MF GO:0016168 chlorophyll binding IEP Enrichment
BP GO:0016226 iron-sulfur cluster assembly IEP Enrichment
BP GO:0017038 protein import IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
BP GO:0019684 photosynthesis, light reaction IEP Enrichment
MF GO:0022884 macromolecule transmembrane transporter activity IEP Enrichment
BP GO:0022900 electron transport chain IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
BP GO:0031163 metallo-sulfur cluster assembly IEP Enrichment
CC GO:0031224 intrinsic component of membrane IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
BP GO:0032940 secretion by cell IEP Enrichment
BP GO:0033036 macromolecule localization IEP Enrichment
BP GO:0034220 ion transmembrane transport IEP Enrichment
BP GO:0035592 establishment of protein localization to extracellular region IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
BP GO:0045184 establishment of protein localization IEP Enrichment
CC GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o) IEP Enrichment
BP GO:0046034 ATP metabolic process IEP Enrichment
BP GO:0046903 secretion IEP Enrichment
BP GO:0051179 localization IEP Enrichment
BP GO:0051234 establishment of localization IEP Enrichment
BP GO:0071692 protein localization to extracellular region IEP Enrichment
BP GO:0071702 organic substance transport IEP Enrichment
BP GO:0071705 nitrogen compound transport IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
BP GO:0098655 cation transmembrane transport IEP Enrichment
BP GO:0098660 inorganic ion transmembrane transport IEP Enrichment
BP GO:0098662 inorganic cation transmembrane transport IEP Enrichment
CC GO:0098796 membrane protein complex IEP Enrichment
MF GO:0140318 protein transporter activity IEP Enrichment
BP GO:0140352 export from cell IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
BP GO:1902600 proton transmembrane transport IEP Enrichment
InterPro domains Description Start Stop
IPR020040 Ribosomal_L6_a/b-dom 99 172
IPR020040 Ribosomal_L6_a/b-dom 15 89
No external refs found!