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  5. TP23G01460.1

TP23G01460.1


Description : DNA topoisomerase, type IA, central; TOPRIM domain [Interproscan].


Gene families : OG_01_0001163 (OrthoFinder) Phylogenetic Tree(s): OG0001163_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: TP23G01460.1
Cluster HCCA: Cluster_107

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000383.96 tig00000383_g24706.t1 RNA biosynthesis.RNA polymerase II-dependent... 0.03 OrthoFinder
EOD24426 No alias TOPRIM domain; DNA topoisomerase, type IA, central... 0.01 OrthoFinder
EOD41689 No alias DNA topoisomerase, type IA, central [Interproscan]. 0.02 OrthoFinder
OT_03G04080.1 No alias Zinc finger, CCHC-type; DNA topoisomerase, type IA,... 0.02 OrthoFinder
OT_06G03350.1 No alias DNA topoisomerase, type IA, central; TOPRIM domain... 0.01 OrthoFinder
Sro1051_g235700.1 Contig3964.g30407 Topoisomerase 3-beta-1 0.05 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003916 DNA topoisomerase activity IEA Interproscan
BP GO:0006265 DNA topological change IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Enrichment
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Enrichment
BP GO:0000398 mRNA splicing, via spliceosome IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003774 motor activity IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006397 mRNA processing IEP Enrichment
BP GO:0008380 RNA splicing IEP Enrichment
BP GO:0009187 cyclic nucleotide metabolic process IEP Enrichment
BP GO:0009190 cyclic nucleotide biosynthetic process IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
BP GO:0016071 mRNA metabolic process IEP Enrichment
CC GO:0016459 myosin complex IEP Enrichment
MF GO:0017069 snRNA binding IEP Enrichment
MF GO:0017070 U6 snRNA binding IEP Enrichment
MF GO:0030623 U5 snRNA binding IEP Enrichment
CC GO:0032991 protein-containing complex IEP Enrichment
BP GO:0035556 intracellular signal transduction IEP Enrichment
CC GO:0071203 WASH complex IEP Enrichment
InterPro domains Description Start Stop
IPR013497 Topo_IA_cen 988 1130
IPR013497 Topo_IA_cen 782 956
IPR006171 TOPRIM_domain 646 761
No external refs found!