1. Home
  2. Species
  3. Thalassiosira pseudonana
  4. Sequence
  5. TP23G01280.1

TP23G01280.1


Description : Chlorophyll A-B binding protein [Interproscan].


Gene families : OG_01_0000076 (OrthoFinder) Phylogenetic Tree(s): OG0000076_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: TP23G01280.1
Cluster HCCA: Cluster_89

Target Alias Description ECC score Gene Family Method Actions
Cre08.g365900 30773702, LHCSR1 Photosynthesis.photophosphorylation.photosystem... 0.06 OrthoFinder
Cz16g02040.t1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.03 OrthoFinder
EOD03771 No alias Light-harvesting family [Ensembl]. 0.02 OrthoFinder
EOD03774 No alias Light-harvesting family [Ensembl]. 0.02 OrthoFinder
EOD06468 No alias Light harvesting protein [Ensembl]. 0.02 OrthoFinder
EOD20809 No alias Light harvesting protein [Ensembl]. 0.02 OrthoFinder
EOD35878 No alias Light harvesting protein [Ensembl]. 0.02 OrthoFinder
PTI_01G10030.1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.03 OrthoFinder
PTI_05G00320.1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.04 OrthoFinder
PTI_14G03460.1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.04 OrthoFinder
Sro1207_g252450.1 Contig242.g2948 B binding protein L1818, chloroplastic 0.03 OrthoFinder
Sro122_g059170.1 Contig71.g736 Chloroplastic 0.04 OrthoFinder
Sro132_g062570.1 Contig2745.g22100 Chloroplastic 0.05 OrthoFinder
Sro1347_g264950.1 Contig4640.g34581 B binding protein 6, chloroplastic 0.05 OrthoFinder
Sro1430_g271970.1 Contig4579.g34184 B binding protein L1818, chloroplastic 0.08 OrthoFinder
Sro149_g068330.1 Contig259.g3201 Chloroplastic 0.02 OrthoFinder
Sro149_g068340.1 Contig259.g3202 B binding protein L1818, chloroplastic 0.03 OrthoFinder
Sro1506_g278310.1 Contig3888.g29862 Chloroplastic 0.06 OrthoFinder
Sro2423_g327210.1 Contig3569.g27581 Chloroplastic 0.08 OrthoFinder
Sro288_g108750.1 Contig62.g495 B binding protein L1818, chloroplastic 0.02 OrthoFinder
Sro412_g137900.1 Contig2922.g23262 Chloroplastic 0.07 OrthoFinder
Sro60_g034620.1 Contig797.g8939 Chloroplastic 0.05 OrthoFinder
Sro652_g181650.1 Contig2024.g17318 Chloroplastic 0.05 OrthoFinder
Sro656_g182410.1 Contig256.g3152 Chloroplastic 0.07 OrthoFinder
Sro698_g189300.1 Contig480.g6500 Chlorophyll a 0.07 OrthoFinder
Sro698_g189330.1 Contig480.g6503 Chloroplastic 0.05 OrthoFinder
Sro829_g208070.1 Contig1016.g10166 Chloroplastic 0.07 OrthoFinder
Sro844_g209920.1 Contig403.g5457 Chloroplastic 0.1 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
BP GO:0003333 amino acid transmembrane transport IEP Enrichment
BP GO:0006720 isoprenoid metabolic process IEP Enrichment
BP GO:0006865 amino acid transport IEP Enrichment
BP GO:0008299 isoprenoid biosynthetic process IEP Enrichment
BP GO:0015849 organic acid transport IEP Enrichment
MF GO:0016829 lyase activity IEP Enrichment
MF GO:0016830 carbon-carbon lyase activity IEP Enrichment
MF GO:0016832 aldehyde-lyase activity IEP Enrichment
MF GO:0043169 cation binding IEP Enrichment
MF GO:0046872 metal ion binding IEP Enrichment
BP GO:1903825 organic acid transmembrane transport IEP Enrichment
BP GO:1905039 carboxylic acid transmembrane transport IEP Enrichment
InterPro domains Description Start Stop
IPR022796 Chloroa_b-bind 34 197
No external refs found!