- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
Description : Photosynthesis system II assembly factor Ycf48/Hcf136-like domain [Interproscan].
Gene families : OG_01_0003736 (OrthoFinder) Phylogenetic Tree(s): OG0003736_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: TP22G01760.1 | |
| Cluster | HCCA: Cluster_26 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Cre06.g273700 | 30778394 | Photosynthesis.photophosphorylation.photosystem... | 0.03 | OrthoFinder | |
| Cz10g21040.t1 | No alias | Photosynthesis system II assembly factor... | 0.03 | OrthoFinder | |
| Dusal.0002s00028.1 | 33187970 | Photosynthesis system II assembly factor... | 0.03 | OrthoFinder | |
| PTI_13G02840.1 | No alias | Photosynthesis system II assembly factor... | 0.1 | OrthoFinder | |
| Sro5_g004430.1 | Contig4001.g30758 | II stability/assembly factor HCF136, chloroplastic | 0.04 | OrthoFinder | |
| Transcript_contig_55682 | 55682 | Photosynthesis system II assembly factor... | 0.02 | OrthoFinder | |
| Vocar.0002s0344.1 | 32890876 | Photosynthesis system II assembly factor... | 0.05 | OrthoFinder | |
| XM_002502020.1 | MICPUN_58459, 58459 | Photosynthesis system II assembly factor... | 0.05 | OrthoFinder | |
| XM_003057421.1 | MicpuC2_32576, 32576 | Photosynthesis system II assembly factor... | 0.04 | OrthoFinder | |
| lcl|LHPG02000001.1_cds_PRW61576.1_616 | PRW61576 | Photosystem II stability assembly factor chloroplastic | 0.02 | OrthoFinder | |
| lcl|VRMN01000002.1_cds_KAA8496427.1_156 | KAA8496427 | Photosystem II stability/assembly factor | 0.02 | OrthoFinder |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003746 | translation elongation factor activity | IEP | Enrichment |
| MF | GO:0004427 | inorganic diphosphatase activity | IEP | Enrichment |
| MF | GO:0004743 | pyruvate kinase activity | IEP | Enrichment |
| MF | GO:0004807 | triose-phosphate isomerase activity | IEP | Enrichment |
| MF | GO:0004812 | aminoacyl-tRNA ligase activity | IEP | Enrichment |
| MF | GO:0005506 | iron ion binding | IEP | Enrichment |
| BP | GO:0006082 | organic acid metabolic process | IEP | Enrichment |
| BP | GO:0006414 | translational elongation | IEP | Enrichment |
| BP | GO:0006418 | tRNA aminoacylation for protein translation | IEP | Enrichment |
| BP | GO:0006633 | fatty acid biosynthetic process | IEP | Enrichment |
| BP | GO:0006810 | transport | IEP | Enrichment |
| BP | GO:0008104 | protein localization | IEP | Enrichment |
| MF | GO:0009678 | pyrophosphate hydrolysis-driven proton transmembrane transporter activity | IEP | Enrichment |
| BP | GO:0010207 | photosystem II assembly | IEP | Enrichment |
| BP | GO:0015031 | protein transport | IEP | Enrichment |
| MF | GO:0015095 | magnesium ion transmembrane transporter activity | IEP | Enrichment |
| BP | GO:0015693 | magnesium ion transport | IEP | Enrichment |
| CC | GO:0016020 | membrane | IEP | Enrichment |
| MF | GO:0016853 | isomerase activity | IEP | Enrichment |
| MF | GO:0016872 | intramolecular lyase activity | IEP | Enrichment |
| MF | GO:0016875 | ligase activity, forming carbon-oxygen bonds | IEP | Enrichment |
| BP | GO:0019752 | carboxylic acid metabolic process | IEP | Enrichment |
| MF | GO:0020037 | heme binding | IEP | Enrichment |
| MF | GO:0030955 | potassium ion binding | IEP | Enrichment |
| MF | GO:0031420 | alkali metal ion binding | IEP | Enrichment |
| BP | GO:0032787 | monocarboxylic acid metabolic process | IEP | Enrichment |
| BP | GO:0033036 | macromolecule localization | IEP | Enrichment |
| BP | GO:0043038 | amino acid activation | IEP | Enrichment |
| BP | GO:0043039 | tRNA aminoacylation | IEP | Enrichment |
| BP | GO:0043436 | oxoacid metabolic process | IEP | Enrichment |
| BP | GO:0044281 | small molecule metabolic process | IEP | Enrichment |
| BP | GO:0045184 | establishment of protein localization | IEP | Enrichment |
| MF | GO:0046906 | tetrapyrrole binding | IEP | Enrichment |
| BP | GO:0051179 | localization | IEP | Enrichment |
| BP | GO:0051234 | establishment of localization | IEP | Enrichment |
| MF | GO:0070569 | uridylyltransferase activity | IEP | Enrichment |
| BP | GO:0071702 | organic substance transport | IEP | Enrichment |
| BP | GO:0071705 | nitrogen compound transport | IEP | Enrichment |
| BP | GO:0072330 | monocarboxylic acid biosynthetic process | IEP | Enrichment |
| MF | GO:0140101 | catalytic activity, acting on a tRNA | IEP | Enrichment |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR028203 | PSII_CF48-like_dom | 38 | 368 |
| No external refs found! |