1. Home
  2. Species
  3. Thalassiosira pseudonana
  4. Sequence
  5. TP20G00330.1

TP20G00330.1


Description : Helicase-associated domain [Interproscan].


Gene families : OG_01_0000042 (OrthoFinder) Phylogenetic Tree(s): OG0000042_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: TP20G00330.1
Cluster HCCA: Cluster_18

Target Alias Description ECC score Gene Family Method Actions
Cre07.g349100 30774605 RNA processing.RNA splicing.spliceosome... 0.02 OrthoFinder
Cz12g28100.t1 No alias Helicase, C-terminal; Domain of unknown function... 0.02 OrthoFinder
Cz16g14170.t1 No alias Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.04 OrthoFinder
Dusal.0244s00011.1 33186504 Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.02 OrthoFinder
OT_01G03120.1 No alias Helicase-associated domain; Helicase, C-terminal; Domain... 0.02 OrthoFinder
PTI_07G01260.1 No alias Helicase, C-terminal; Helicase-associated domain; Domain... 0.02 OrthoFinder
PTI_07G04380.1 No alias Helicase, C-terminal; Domain of unknown function... 0.02 OrthoFinder
Sro657_g182550.1 Contig301.g3975 Splicing factor ATP-dependent RNA helicase-like protein cdc28 0.02 OrthoFinder
SymbC1.scaffold4319.1 4319.1 DEAD/DEAH box helicase domain; Domain of unknown... 0.03 OrthoFinder
Transcript_contig_53761 53761 Helicase-associated domain; Helicase, C-terminal; Domain... 0.01 OrthoFinder
Transcript_contig_55707 55707 Helicase, C-terminal; S1 domain; DEAD/DEAH box helicase... 0.01 OrthoFinder
lcl|LHPG02000004.1_cds_PRW59127.1_7530 PRW59127 Pre-mRNA-splicing factor ATP-dependent RNA helicase... 0.02 OrthoFinder
lcl|LHPG02000005.1_cds_PRW58375.1_7631 PRW58375 Putative pre-mRNA-splicing factor ATP-dependent RNA helicase 0.02 OrthoFinder
lcl|LHPG02000018.1_cds_PRW32898.1_3654 PRW32898 ATP-dependent RNA helicase isoform X1 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0004386 helicase activity IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000255 allantoin metabolic process IEP Enrichment
BP GO:0000256 allantoin catabolic process IEP Enrichment
MF GO:0003887 DNA-directed DNA polymerase activity IEP Enrichment
MF GO:0004527 exonuclease activity IEP Enrichment
MF GO:0008408 3'-5' exonuclease activity IEP Enrichment
MF GO:0016840 carbon-nitrogen lyase activity IEP Enrichment
MF GO:0016842 amidine-lyase activity IEP Enrichment
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Enrichment
MF GO:0030151 molybdenum ion binding IEP Enrichment
MF GO:0034061 DNA polymerase activity IEP Enrichment
BP GO:0042254 ribosome biogenesis IEP Enrichment
BP GO:0043605 cellular amide catabolic process IEP Enrichment
BP GO:0044085 cellular component biogenesis IEP Enrichment
BP GO:0044270 cellular nitrogen compound catabolic process IEP Enrichment
BP GO:0046700 heterocycle catabolic process IEP Enrichment
MF GO:0050385 ureidoglycolate lyase activity IEP Enrichment
BP GO:1901361 organic cyclic compound catabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR007502 Helicase-assoc_dom 81 155
No external refs found!