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Description : LSM domain, eukaryotic/archaea-type [Interproscan].
Gene families : OG_01_0005412 (OrthoFinder) Phylogenetic Tree(s): OG0005412_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: TP18G01140.1 | |
| Cluster | HCCA: Cluster_13 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Sro749_g196790.1 | Contig2460.g20136 | LSM domain | 0.01 | OrthoFinder |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0004197 | cysteine-type endopeptidase activity | IEP | Enrichment |
| MF | GO:0004499 | N,N-dimethylaniline monooxygenase activity | IEP | Enrichment |
| MF | GO:0004659 | prenyltransferase activity | IEP | Enrichment |
| BP | GO:0006887 | exocytosis | IEP | Enrichment |
| MF | GO:0008318 | protein prenyltransferase activity | IEP | Enrichment |
| MF | GO:0008767 | UDP-galactopyranose mutase activity | IEP | Enrichment |
| CC | GO:0009507 | chloroplast | IEP | Enrichment |
| CC | GO:0009536 | plastid | IEP | Enrichment |
| BP | GO:0016073 | snRNA metabolic process | IEP | Enrichment |
| BP | GO:0016180 | snRNA processing | IEP | Enrichment |
| MF | GO:0016709 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen | IEP | Enrichment |
| BP | GO:0018342 | protein prenylation | IEP | Enrichment |
| BP | GO:0019915 | lipid storage | IEP | Enrichment |
| BP | GO:0031123 | RNA 3'-end processing | IEP | Enrichment |
| BP | GO:0032940 | secretion by cell | IEP | Enrichment |
| BP | GO:0034472 | snRNA 3'-end processing | IEP | Enrichment |
| BP | GO:0034477 | U6 snRNA 3'-end processing | IEP | Enrichment |
| BP | GO:0043628 | ncRNA 3'-end processing | IEP | Enrichment |
| MF | GO:0046422 | violaxanthin de-epoxidase activity | IEP | Enrichment |
| BP | GO:0046903 | secretion | IEP | Enrichment |
| BP | GO:0051235 | maintenance of location | IEP | Enrichment |
| BP | GO:0071586 | CAAX-box protein processing | IEP | Enrichment |
| BP | GO:0097354 | prenylation | IEP | Enrichment |
| BP | GO:0140352 | export from cell | IEP | Enrichment |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR001163 | LSM_dom_euk/arc | 235 | 355 |
| No external refs found! |