1. Home
  2. Species
  3. Thalassiosira pseudonana
  4. Sequence
  5. TP14G02630.1

TP14G02630.1


Description : Ribosomal protein L2, C-terminal; Ribosomal Proteins L2, RNA binding domain [Interproscan].


Gene families : OG_01_0003494 (OrthoFinder) Phylogenetic Tree(s): OG0003494_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: TP14G02630.1
Cluster HCCA: Cluster_24

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020965.22 tig00020965_g16838.t1 Protein biosynthesis.cytosolic ribosome.large subunit... 0.34 OrthoFinder
Cre12.g535851 30793369 Protein biosynthesis.cytosolic ribosome.large subunit... 0.43 OrthoFinder
Cz05g13020.t1 No alias Ribosomal Proteins L2, RNA binding domain; Ribosomal... 0.15 OrthoFinder
Dusal.0446s00012.1 33201126 Ribosomal protein L2, C-terminal; Ribosomal Proteins L2,... 0.23 OrthoFinder
EOD38182 No alias Ribosomal Proteins L2, RNA binding domain; Ribosomal... 0.18 OrthoFinder
OT_04G01870.1 No alias Ribosomal Proteins L2, RNA binding domain; Ribosomal... 0.21 OrthoFinder
PTI_11G02510.1 No alias Ribosomal Proteins L2, RNA binding domain; Ribosomal... 0.37 OrthoFinder
Sro1384_g268110.1 Contig2234.g18573 60S ribosomal protein L8 0.44 OrthoFinder
Vocar.0043s0070.1 32886882 Ribosomal protein L2, C-terminal; Ribosomal Proteins L2,... 0.09 OrthoFinder
XM_002504886.1 MICPUN_95460, 95460 Ribosomal Proteins L2, RNA binding domain; Ribosomal... 0.39 OrthoFinder
XM_003060635.1 MicpuC2_49650, 49650 Ribosomal Proteins L2, RNA binding domain; Ribosomal... 0.11 OrthoFinder
lcl|BLLF01003547.1_cds_GFH27617.1_22094 HaLaN_25972, GFH27617 Ribosomal_L2_C domain-containing protein 0.02 OrthoFinder
lcl|LHPG02000012.1_cds_PRW45027.1_1889 PRW45027 60S ribosomal L8 0.14 OrthoFinder
lcl|VRMN01000005.1_cds_KAA8494059.1_3923 KAA8494059 60S ribosomal protein L8 0.2 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0004807 triose-phosphate isomerase activity IEP Enrichment
BP GO:0006360 transcription by RNA polymerase I IEP Enrichment
CC GO:0015934 large ribosomal subunit IEP Enrichment
MF GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor IEP Enrichment
MF GO:0019843 rRNA binding IEP Enrichment
CC GO:0044391 ribosomal subunit IEP Enrichment
InterPro domains Description Start Stop
IPR022669 Ribosomal_L2_C 98 226
IPR022666 Rbsml_prot_L2_RNA-bd_dom 11 90
No external refs found!