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  5. Cpa|evm.model.tig00000025.21

Cpa|evm.model.tig00000025.21 (tig00000025_g7931.t1)


Aliases : tig00000025_g7931.t1

Description : RNA pseudouridine synthase 4, mitochondrial OS=Arabidopsis thaliana


Gene families : OG_01_0000056 (OrthoFinder) Phylogenetic Tree(s): OG0000056_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00000025.21
Cluster HCCA: Cluster_85

Target Alias Description ECC score Gene Family Method Actions
Cre02.g144002 30785921 No description available 0.03 OrthoFinder
Cre10.g428400 30790028, PUS7 RNA pseudouridine synthase 4, mitochondrial... 0.02 OrthoFinder
EOD03926 No alias Pseudouridine synthase, RsuA/RluA [Interproscan]. 0.01 OrthoFinder
EOD14502 No alias Pseudouridine synthase, RsuA/RluA [Interproscan]. 0.02 OrthoFinder
EOD15845 No alias Pseudouridine synthase, RsuA/RluA [Interproscan]. 0.02 OrthoFinder
Sro810_g205780.1 Contig3420.g26656 Ribosomal large subunit pseudouridine synthase D 0.02 OrthoFinder
lcl|VRMN01000007.1_cds_KAA8493132.1_9433 KAA8493132 Putative RNA pseudouridine synthase 0.02 OrthoFinder

Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEA Interproscan
MF GO:0003723 RNA binding IEA Interproscan
BP GO:0009451 RNA modification IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000959 mitochondrial RNA metabolic process IEP Enrichment
MF GO:0003916 DNA topoisomerase activity IEP Enrichment
MF GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity IEP Enrichment
MF GO:0004609 phosphatidylserine decarboxylase activity IEP Enrichment
MF GO:0004764 shikimate 3-dehydrogenase (NADP+) activity IEP Enrichment
MF GO:0005542 folic acid binding IEP Enrichment
CC GO:0005739 mitochondrion IEP Enrichment
BP GO:0006265 DNA topological change IEP Enrichment
BP GO:0006996 organelle organization IEP Enrichment
MF GO:0008094 ATPase, acting on DNA IEP Enrichment
MF GO:0016830 carbon-carbon lyase activity IEP Enrichment
MF GO:0016831 carboxy-lyase activity IEP Enrichment
MF GO:0019842 vitamin binding IEP Enrichment
MF GO:0031406 carboxylic acid binding IEP Enrichment
MF GO:0033218 amide binding IEP Enrichment
MF GO:0043177 organic acid binding IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
BP GO:0051276 chromosome organization IEP Enrichment
BP GO:0071103 DNA conformation change IEP Enrichment
MF GO:0072341 modified amino acid binding IEP Enrichment
InterPro domains Description Start Stop
IPR006145 PsdUridine_synth_RsuA/RluA 116 257
No external refs found!