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  5. TP12G03300.1

TP12G03300.1


Description : SNF2-related, N-terminal domain; Chromo domain; Helicase, C-terminal [Interproscan].


Gene families : OG_01_0000017 (OrthoFinder) Phylogenetic Tree(s): OG0000017_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: TP12G03300.1
Cluster HCCA: Cluster_51

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000983.26 tig00000983_g5915.t1 RNA biosynthesis.RNA polymerase II-dependent... 0.02 OrthoFinder
Cpa|evm.model.tig00020960.24 tig00020960_g16545.t1 Protein CHROMATIN REMODELING 5 OS=Arabidopsis thaliana 0.02 OrthoFinder
Cz05g37180.t1 No alias SNF2-related, N-terminal domain; Helicase, C-terminal... 0.03 OrthoFinder
Dusal.0357s00004.1 33189829 SNF2-related, N-terminal domain; Helicase, C-terminal;... 0.02 OrthoFinder
Dusal.1946s00001.1 33193641 Helicase, C-terminal [Interproscan]. 0.01 OrthoFinder
PTI_03G03660.1 No alias Helicase, C-terminal; SNF2-related, N-terminal domain... 0.02 OrthoFinder
PTI_05G01880.1 No alias High mobility group box domain; Helicase, C-terminal;... 0.02 OrthoFinder
PTI_10G02350.1 No alias Chromo domain; SNF2-related, N-terminal domain [Interproscan]. 0.02 OrthoFinder
PTI_24G01280.1 No alias Helicase, C-terminal; SNF2-related, N-terminal domain... 0.03 OrthoFinder
Sro1796_g298120.1 Contig441.g5925 Probable chromatin-remodeling complex ATPase chain 0.02 OrthoFinder
Sro272_g104840.1 Contig2144.g18025 Chromodomain-helicase-DNA-binding protein 0.05 OrthoFinder
Sro29_g019150.1 Contig1384.g12758 CHD3-type chromatin-remodeling factor CHR7 0.02 OrthoFinder
Sro2_g001340.1 Contig467.g6292 CHD3-type chromatin-remodeling factor PICKLE 0.02 OrthoFinder
Sro358_g125960.1 Contig1210.g11383 Probable chromatin-remodeling complex ATPase chain 0.02 OrthoFinder
Sro566_g167850.1 Contig3739.g28680 ISWI chromatin-remodeling complex ATPase ISW2 0.03 OrthoFinder
SymbC1.scaffold1517.8 1517.8 SNF2-related, N-terminal domain [Interproscan]. 0.02 OrthoFinder
SymbC1.scaffold1732.5 1732.5 SNF2-related, N-terminal domain; Helicase, C-terminal... 0.01 OrthoFinder
TP05G00410.1 No alias SNF2-related, N-terminal domain; Bromodomain;... 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004601 peroxidase activity IEP Enrichment
MF GO:0005507 copper ion binding IEP Enrichment
CC GO:0005875 microtubule associated complex IEP Enrichment
BP GO:0006950 response to stress IEP Enrichment
BP GO:0006979 response to oxidative stress IEP Enrichment
MF GO:0008519 ammonium transmembrane transporter activity IEP Enrichment
BP GO:0015696 ammonium transport IEP Enrichment
MF GO:0016209 antioxidant activity IEP Enrichment
MF GO:0016491 oxidoreductase activity IEP Enrichment
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP Enrichment
MF GO:0020037 heme binding IEP Enrichment
CC GO:0030286 dynein complex IEP Enrichment
MF GO:0043531 ADP binding IEP Enrichment
MF GO:0046906 tetrapyrrole binding IEP Enrichment
BP GO:0050896 response to stimulus IEP Enrichment
BP GO:0055114 obsolete oxidation-reduction process IEP Enrichment
InterPro domains Description Start Stop
IPR001650 Helicase_C 600 692
IPR000330 SNF2_N 280 563
IPR023780 Chromo_domain 95 125
No external refs found!