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  5. TP10G03790.1

TP10G03790.1


Description : Ribosomal protein S5, C-terminal; Ribosomal protein S5, N-terminal [Interproscan].


Gene families : OG_01_0002382 (OrthoFinder) Phylogenetic Tree(s): OG0002382_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: TP10G03790.1
Cluster HCCA: Cluster_24

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020961.135 tig00020961_g16755.t1 Protein biosynthesis.cytosolic ribosome.small subunit... 0.06 OrthoFinder
Cre01.g039250 30788560, RPS2 Protein biosynthesis.cytosolic ribosome.small subunit... 0.05 OrthoFinder
Cz06g19150.t1 No alias Ribosomal protein S5, C-terminal; Ribosomal protein S5,... 0.03 OrthoFinder
EOD22582 No alias Ribosomal protein S5, C-terminal [Interproscan]. 0.03 OrthoFinder
OT_17G01420.1 No alias Ribosomal protein S5, C-terminal; Ribosomal protein S5,... 0.07 OrthoFinder
PTI_17G01720.1 No alias Ribosomal protein S5, C-terminal; Ribosomal protein S5,... 0.09 OrthoFinder
Sro693_g188270.1 Contig3212.g25392 40S ribosomal protein S2 (Fragment) 0.13 OrthoFinder
Transcript_contig_79122 79122 Ribosomal protein S5, C-terminal; Ribosomal protein S5,... 0.03 OrthoFinder
XM_002502219.1 MICPUN_90856, 90856 Ribosomal protein S5, N-terminal; Ribosomal protein S5,... 0.03 OrthoFinder
XM_003063973.1 MicpuC2_49763, 49763 Ribosomal protein S5, C-terminal; Ribosomal protein S5,... 0.02 OrthoFinder
lcl|BLLF01000722.1_cds_GFH14405.1_8882 HaLaN_10454, GFH14405 Component of cytosolic 80S ribosome and 40S small subunit 0.02 OrthoFinder
lcl|LHPG02000014.1_cds_PRW39136.1_2764 PRW39136 40S ribosomal S2-4 0.05 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8497763.1_6716 KAA8497763 40S ribosomal protein S2 0.06 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000096 sulfur amino acid metabolic process IEP Enrichment
MF GO:0003924 GTPase activity IEP Enrichment
MF GO:0004455 ketol-acid reductoisomerase activity IEP Enrichment
MF GO:0005525 GTP binding IEP Enrichment
BP GO:0006534 cysteine metabolic process IEP Enrichment
MF GO:0008097 5S rRNA binding IEP Enrichment
BP GO:0009069 serine family amino acid metabolic process IEP Enrichment
BP GO:0009081 branched-chain amino acid metabolic process IEP Enrichment
BP GO:0009082 branched-chain amino acid biosynthetic process IEP Enrichment
BP GO:0009092 homoserine metabolic process IEP Enrichment
BP GO:0009894 regulation of catabolic process IEP Enrichment
BP GO:0010608 posttranscriptional regulation of gene expression IEP Enrichment
MF GO:0016462 pyrophosphatase activity IEP Enrichment
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Enrichment
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Enrichment
MF GO:0017111 nucleoside-triphosphatase activity IEP Enrichment
MF GO:0019001 guanyl nucleotide binding IEP Enrichment
BP GO:0019346 transsulfuration IEP Enrichment
MF GO:0019843 rRNA binding IEP Enrichment
BP GO:0030001 metal ion transport IEP Enrichment
BP GO:0031329 regulation of cellular catabolic process IEP Enrichment
MF GO:0032561 guanyl ribonucleotide binding IEP Enrichment
BP GO:0043487 regulation of RNA stability IEP Enrichment
BP GO:0043488 regulation of mRNA stability IEP Enrichment
BP GO:0044528 regulation of mitochondrial mRNA stability IEP Enrichment
BP GO:0050667 homocysteine metabolic process IEP Enrichment
BP GO:0061013 regulation of mRNA catabolic process IEP Enrichment
BP GO:1903311 regulation of mRNA metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR005324 Ribosomal_S5_C 168 235
IPR013810 Ribosomal_S5_N 85 149
No external refs found!