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  5. TP08G03670.1

TP08G03670.1


Description : Ribosomal protein L7Ae/L30e/S12e/Gadd45 [Interproscan].


Gene families : OG_01_0003786 (OrthoFinder) Phylogenetic Tree(s): OG0003786_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: TP08G03670.1
Cluster HCCA: Cluster_24

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00001164.6 tig00001164_g7396.t1 Protein biosynthesis.cytosolic ribosome.large subunit... 0.19 OrthoFinder
Cre10.g420750 30790763, RPL30 Protein biosynthesis.cytosolic ribosome.large subunit... 0.43 OrthoFinder
Dusal.0308s00002.1 33194619 Ribosomal protein L7Ae/L30e/S12e/Gadd45 [Interproscan]. 0.21 OrthoFinder
EOD38147 No alias Putative ribosomal protein L30 [Ensembl]. 0.11 OrthoFinder
OT_17G01970.1 No alias Ribosomal protein L7Ae/L30e/S12e/Gadd45 [Interproscan]. 0.15 OrthoFinder
PTI_03G00930.1 No alias Ribosomal protein L7Ae/L30e/S12e/Gadd45 [Interproscan]. 0.25 OrthoFinder
Sro580_g170070.1 Contig2039.g17522 60S ribosomal protein L30 0.53 OrthoFinder
SymbC1.scaffold96.16 96.16 Ribosomal protein L7Ae/L30e/S12e/Gadd45 [Interproscan]. 0.02 OrthoFinder
Vocar.0016s0044.1 32898101 Ribosomal protein L7Ae/L30e/S12e/Gadd45 [Interproscan]. 0.27 OrthoFinder
XM_002502647.1 MICPUN_94345, 94345 Ribosomal protein L7Ae/L30e/S12e/Gadd45 [Interproscan]. 0.24 OrthoFinder
XM_003064220.1 MicpuC2_49144, 49144 Ribosomal protein L7Ae/L30e/S12e/Gadd45 [Interproscan]. 0.02 OrthoFinder
lcl|BLLF01002655.1_cds_GFH24873.1_19350 HaLaN_22743, GFH24873 Ribosomal_L7Ae domain-containing protein 0.09 OrthoFinder
lcl|LHPG02000022.1_cds_PRW20625.1_5215 PRW20625 60S ribosomal L30 0.29 OrthoFinder
lcl|VRMN01000007.1_cds_KAA8493323.1_9624 KAA8493323 60S ribosomal protein L30 0.22 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003735 structural constituent of ribosome IEP Enrichment
MF GO:0005198 structural molecule activity IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
CC GO:0005840 ribosome IEP Enrichment
BP GO:0006412 translation IEP Enrichment
BP GO:0006518 peptide metabolic process IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
MF GO:0008097 5S rRNA binding IEP Enrichment
BP GO:0008150 biological_process IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
BP GO:0009058 biosynthetic process IEP Enrichment
BP GO:0009059 macromolecule biosynthetic process IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
CC GO:0015934 large ribosomal subunit IEP Enrichment
BP GO:0019538 protein metabolic process IEP Enrichment
MF GO:0019843 rRNA binding IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0034645 cellular macromolecule biosynthetic process IEP Enrichment
BP GO:0043043 peptide biosynthetic process IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043228 non-membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Enrichment
BP GO:0043603 cellular amide metabolic process IEP Enrichment
BP GO:0043604 amide biosynthetic process IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044238 primary metabolic process IEP Enrichment
BP GO:0044249 cellular biosynthetic process IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
BP GO:0044267 cellular protein metabolic process IEP Enrichment
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Enrichment
CC GO:0044391 ribosomal subunit IEP Enrichment
BP GO:0071704 organic substance metabolic process IEP Enrichment
CC GO:0110165 cellular anatomical entity IEP Enrichment
BP GO:1901564 organonitrogen compound metabolic process IEP Enrichment
BP GO:1901566 organonitrogen compound biosynthetic process IEP Enrichment
BP GO:1901576 organic substance biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR004038 Ribosomal_L7Ae/L30e/S12e/Gad45 14 106
No external refs found!