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  5. TP07G02750.1

TP07G02750.1


Description : Ribosomal protein L3 [Interproscan].


Gene families : OG_01_0002780 (OrthoFinder) Phylogenetic Tree(s): OG0002780_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: TP07G02750.1
Cluster HCCA: Cluster_24

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000025.50 tig00000025_g7954.t1 Protein biosynthesis.cytosolic ribosome.large subunit... 0.45 OrthoFinder
Cre10.g417700 30789966, RPL3 Protein biosynthesis.cytosolic ribosome.large subunit... 0.18 OrthoFinder
Cz12g24070.t1 No alias Ribosomal protein L3 [Interproscan]. 0.12 OrthoFinder
Dusal.0375s00002.1 33193949 Ribosomal protein L3 [Interproscan]. 0.2 OrthoFinder
EOD37150 No alias 60S ribosomal protein L3 [Ensembl]. 0.04 OrthoFinder
OT_01G00490.1 No alias Ribosomal protein L3 [Interproscan]. 0.3 OrthoFinder
PTI_11G03220.1 No alias Ribosomal protein L3 [Interproscan]. 0.44 OrthoFinder
Sro49_g028920.1 Contig2054.g17642 60S ribosomal protein L3 0.43 OrthoFinder
Sro691_g187740.1 Contig1133.g10869 60S ribosomal protein L3 0.54 OrthoFinder
Vocar.0016s0012.1 32897929 Ribosomal protein L3 [Interproscan]. 0.14 OrthoFinder
XM_002507702.1 MICPUN_89851, 89851 Ribosomal protein L3 0.45 OrthoFinder
lcl|BLLF01003811.1_cds_GFH28271.1_22748 HaLaN_26740, GFH28271 Ribosomal protein L3 0.06 OrthoFinder
lcl|LHPG02000012.1_cds_PRW44927.1_1937 PRW44927 60S ribosomal L3 0.21 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8495890.1_1888 KAA8495890 60S ribosomal protein L3 0.27 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003746 translation elongation factor activity IEP Enrichment
BP GO:0006417 regulation of translation IEP Enrichment
BP GO:0006448 regulation of translational elongation IEP Enrichment
BP GO:0006449 regulation of translational termination IEP Enrichment
MF GO:0008097 5S rRNA binding IEP Enrichment
BP GO:0009891 positive regulation of biosynthetic process IEP Enrichment
BP GO:0009893 positive regulation of metabolic process IEP Enrichment
BP GO:0010557 positive regulation of macromolecule biosynthetic process IEP Enrichment
BP GO:0010604 positive regulation of macromolecule metabolic process IEP Enrichment
BP GO:0010608 posttranscriptional regulation of gene expression IEP Enrichment
BP GO:0010628 positive regulation of gene expression IEP Enrichment
CC GO:0015934 large ribosomal subunit IEP Enrichment
MF GO:0019843 rRNA binding IEP Enrichment
BP GO:0031325 positive regulation of cellular metabolic process IEP Enrichment
BP GO:0031328 positive regulation of cellular biosynthetic process IEP Enrichment
BP GO:0032268 regulation of cellular protein metabolic process IEP Enrichment
BP GO:0032270 positive regulation of cellular protein metabolic process IEP Enrichment
BP GO:0034248 regulation of cellular amide metabolic process IEP Enrichment
BP GO:0034250 positive regulation of cellular amide metabolic process IEP Enrichment
MF GO:0043021 ribonucleoprotein complex binding IEP Enrichment
MF GO:0043022 ribosome binding IEP Enrichment
BP GO:0043243 positive regulation of protein-containing complex disassembly IEP Enrichment
BP GO:0043244 regulation of protein-containing complex disassembly IEP Enrichment
CC GO:0044391 ribosomal subunit IEP Enrichment
MF GO:0044877 protein-containing complex binding IEP Enrichment
BP GO:0045727 positive regulation of translation IEP Enrichment
BP GO:0045901 positive regulation of translational elongation IEP Enrichment
BP GO:0045905 positive regulation of translational termination IEP Enrichment
BP GO:0048518 positive regulation of biological process IEP Enrichment
BP GO:0048522 positive regulation of cellular process IEP Enrichment
BP GO:0051128 regulation of cellular component organization IEP Enrichment
BP GO:0051130 positive regulation of cellular component organization IEP Enrichment
BP GO:0051173 positive regulation of nitrogen compound metabolic process IEP Enrichment
BP GO:0051246 regulation of protein metabolic process IEP Enrichment
BP GO:0051247 positive regulation of protein metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR000597 Ribosomal_L3 1 369
No external refs found!