Description : SNF2-related, N-terminal domain; Helicase, C-terminal [Interproscan].

Gene families : OG_01_0000017 (OrthoFinder) Phylogenetic Tree(s): OG0000017_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type Description Actions
Neighborhood HRR: TP07G00550.1
Cluster HCCA: Cluster_84

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000983.26 tig00000983_g5915.t1 RNA biosynthesis.RNA polymerase II-dependent... 0.02 OrthoFinder
Cpa|evm.model.tig00020960.24 tig00020960_g16545.t1 Protein CHROMATIN REMODELING 5 OS=Arabidopsis thaliana 0.03 OrthoFinder
Cre03.g179300 30786668 RNA biosynthesis.RNA polymerase II-dependent... 0.01 OrthoFinder
Cre07.g325700 30774388 ATP-dependent helicase BRM OS=Arabidopsis thaliana 0.03 OrthoFinder
Cre08.g377200 30773522 CHD3-type chromatin-remodeling factor PICKLE... 0.02 OrthoFinder
Cre12.g508150 30793288 Chromatin organisation.chromatin remodeling... 0.02 OrthoFinder
Cz02g31160.t1 No alias Helicase, C-terminal; SLIDE domain; SNF2-related,... 0.02 OrthoFinder
Cz03g32130.t1 No alias SNF2-related, N-terminal domain; Helicase, C-terminal... 0.01 OrthoFinder
Cz19g07040.t1 No alias Helicase, C-terminal; SNF2-related, N-terminal domain;... 0.03 OrthoFinder
Dusal.0001s00013.1 33198814 SNF2-related, N-terminal domain; Helicase, C-terminal;... 0.02 OrthoFinder
Dusal.0752s00003.1 33199467 HEAT-like repeat [Interproscan]. 0.03 OrthoFinder
EOD25651 No alias Helicase, C-terminal; SNF2-related, N-terminal domain... 0.02 OrthoFinder
EOD27153 No alias Helicase, C-terminal; SNF2-related, N-terminal domain... 0.01 OrthoFinder
PTI_05G01880.1 No alias High mobility group box domain; Helicase, C-terminal;... 0.03 OrthoFinder
PTI_10G00070.1 No alias Helicase, C-terminal; High mobility group box domain;... 0.03 OrthoFinder
PTI_10G02350.1 No alias Chromo domain; SNF2-related, N-terminal domain [Interproscan]. 0.03 OrthoFinder
PTI_24G01280.1 No alias Helicase, C-terminal; SNF2-related, N-terminal domain... 0.03 OrthoFinder
Sro1796_g298120.1 Contig441.g5925 Probable chromatin-remodeling complex ATPase chain 0.02 OrthoFinder
Sro19_g013190.1 Contig446.g5983 CHD3-type chromatin-remodeling factor 0.02 OrthoFinder
Sro272_g104840.1 Contig2144.g18025 Chromodomain-helicase-DNA-binding protein 0.04 OrthoFinder
Sro2_g001340.1 Contig467.g6292 CHD3-type chromatin-remodeling factor PICKLE 0.02 OrthoFinder
SymbC1.scaffold1517.8 1517.8 SNF2-related, N-terminal domain [Interproscan]. 0.02 OrthoFinder
TP05G00410.1 No alias SNF2-related, N-terminal domain; Bromodomain;... 0.03 OrthoFinder
Vocar.0011s0087.1 32895477 Domain of unknown function DUF3535; Helicase,... 0.02 OrthoFinder
Vocar.0053s0011.1 32887634 Domain of unknown function DUF1086; Helicase,... 0.02 OrthoFinder
XM_002509111.1 MICPUN_62843, 62843 SNF2 super family 0.02 OrthoFinder
XM_003055229.1 MicpuC2_12258, 12258 Helicase, C-terminal; SNF2-related, N-terminal domain... 0.01 OrthoFinder
XM_003061140.1 MicpuC2_28265, 28265 SNF2 super family 0.01 OrthoFinder
XM_003062178.1 MicpuC2_21039, 21039 SNF2 super family 0.01 OrthoFinder
lcl|LHPG02000002.1_cds_PRW60614.1_4411 PRW60614 ATP-dependent helicase BRM 0.01 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8498955.1_7908 KAA8498955 SWI/SNF chromatin-remodeling complex subunit snf22 0.02 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8495718.1_1716 KAA8495718 Chromodomain-helicase-DNA-binding protein 2 0.03 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8494382.1_2912 KAA8494382 ISWI chromatin-remodeling complex ATPase CHR17 0.02 OrthoFinder
lcl|VRMN01000008.1_cds_KAA8492942.1_2678 KAA8492942 TATA-binding protein-associated factor 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0003887 DNA-directed DNA polymerase activity IEP Enrichment
MF GO:0004674 protein serine/threonine kinase activity IEP Enrichment
CC GO:0005875 microtubule associated complex IEP Enrichment
MF GO:0008270 zinc ion binding IEP Enrichment
CC GO:0030286 dynein complex IEP Enrichment
MF GO:0034061 DNA polymerase activity IEP Enrichment
MF GO:0043169 cation binding IEP Enrichment
MF GO:0044877 protein-containing complex binding IEP Enrichment
BP GO:0045454 cell redox homeostasis IEP Enrichment
MF GO:0046872 metal ion binding IEP Enrichment
InterPro domains Description Start Stop
IPR001650 Helicase_C 203 319
IPR000330 SNF2_N 10 175
No external refs found!