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Description : Ribosomal protein S8e/ribosomal biogenesis NSA2 [Interproscan].
Gene families : OG_01_0004536 (OrthoFinder) Phylogenetic Tree(s): OG0004536_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: TP06G05960.1 | |
| Cluster | HCCA: Cluster_21 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Cpa|evm.model.tig00000944.38 | tig00000944_g5960.t1 | Protein biosynthesis.cytosolic ribosome.large subunit... | 0.07 | OrthoFinder | |
| EOD09645 | No alias | Ribosomal protein S8e/ribosomal biogenesis NSA2 [Interproscan]. | 0.01 | OrthoFinder | |
| OT_17G02370.1 | No alias | Ribosomal protein S8e/ribosomal biogenesis NSA2 [Interproscan]. | 0.13 | OrthoFinder | |
| PTI_08G03640.1 | No alias | Ribosomal protein S8e/ribosomal biogenesis NSA2 [Interproscan]. | 0.2 | OrthoFinder | |
| Sro1010_g230920.1 | Contig4560.g34057 | Ribosome biogenesis protein NSA2 homolog | 0.15 | OrthoFinder | |
| XM_002504902.1 | MICPUN_62565, 62565 | Ribosomal protein S8E | 0.07 | OrthoFinder | |
| XM_003060620.1 | MicpuC2_44560, 44560 | Ribosomal protein S8e | 0.07 | OrthoFinder | |
| lcl|VRMN01000002.1_cds_KAA8497326.1_1055 | KAA8497326 | Ribosome biogenesis protein NSA2-like | 0.07 | OrthoFinder |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0000154 | rRNA modification | IEP | Enrichment |
| BP | GO:0001510 | RNA methylation | IEP | Enrichment |
| MF | GO:0003676 | nucleic acid binding | IEP | Enrichment |
| MF | GO:0003725 | double-stranded RNA binding | IEP | Enrichment |
| MF | GO:0005488 | binding | IEP | Enrichment |
| CC | GO:0005634 | nucleus | IEP | Enrichment |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | Enrichment |
| BP | GO:0006364 | rRNA processing | IEP | Enrichment |
| BP | GO:0006396 | RNA processing | IEP | Enrichment |
| BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | Enrichment |
| BP | GO:0008033 | tRNA processing | IEP | Enrichment |
| MF | GO:0008173 | RNA methyltransferase activity | IEP | Enrichment |
| MF | GO:0008175 | tRNA methyltransferase activity | IEP | Enrichment |
| MF | GO:0008176 | tRNA (guanine-N7-)-methyltransferase activity | IEP | Enrichment |
| MF | GO:0008649 | rRNA methyltransferase activity | IEP | Enrichment |
| MF | GO:0008757 | S-adenosylmethionine-dependent methyltransferase activity | IEP | Enrichment |
| BP | GO:0009451 | RNA modification | IEP | Enrichment |
| BP | GO:0016070 | RNA metabolic process | IEP | Enrichment |
| BP | GO:0016072 | rRNA metabolic process | IEP | Enrichment |
| MF | GO:0016423 | tRNA (guanine) methyltransferase activity | IEP | Enrichment |
| MF | GO:0016435 | rRNA (guanine) methyltransferase activity | IEP | Enrichment |
| CC | GO:0030684 | preribosome | IEP | Enrichment |
| CC | GO:0030688 | preribosome, small subunit precursor | IEP | Enrichment |
| BP | GO:0031167 | rRNA methylation | IEP | Enrichment |
| CC | GO:0032040 | small-subunit processome | IEP | Enrichment |
| BP | GO:0034470 | ncRNA processing | IEP | Enrichment |
| BP | GO:0034660 | ncRNA metabolic process | IEP | Enrichment |
| BP | GO:0036265 | RNA (guanine-N7)-methylation | IEP | Enrichment |
| BP | GO:0043414 | macromolecule methylation | IEP | Enrichment |
| BP | GO:0046483 | heterocycle metabolic process | IEP | Enrichment |
| BP | GO:0070475 | rRNA base methylation | IEP | Enrichment |
| BP | GO:0070476 | rRNA (guanine-N7)-methylation | IEP | Enrichment |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | Enrichment |
| MF | GO:0097159 | organic cyclic compound binding | IEP | Enrichment |
| MF | GO:0140098 | catalytic activity, acting on RNA | IEP | Enrichment |
| MF | GO:0140101 | catalytic activity, acting on a tRNA | IEP | Enrichment |
| MF | GO:0140102 | catalytic activity, acting on a rRNA | IEP | Enrichment |
| BP | GO:1901360 | organic cyclic compound metabolic process | IEP | Enrichment |
| MF | GO:1901363 | heterocyclic compound binding | IEP | Enrichment |
| CC | GO:1990904 | ribonucleoprotein complex | IEP | Enrichment |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR022309 | Ribosomal_S8e/biogenesis_NSA2 | 32 | 259 |
| No external refs found! |