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  5. TP06G05220.1

TP06G05220.1


Description : Ribosomal protein L23/L25, N-terminal; Ribosomal protein L25/L23 [Interproscan].


Gene families : OG_01_0004081 (OrthoFinder) Phylogenetic Tree(s): OG0004081_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: TP06G05220.1
Cluster HCCA: Cluster_24

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000037.39 tig00000037_g10108.t1 Protein biosynthesis.cytosolic ribosome.large subunit... 0.27 OrthoFinder
Cre06.g282500 30779252, RPL23a Protein biosynthesis.cytosolic ribosome.large subunit... 0.38 OrthoFinder
Cz15g20240.t1 No alias Ribosomal protein L23/L25, N-terminal; Ribosomal protein... 0.26 OrthoFinder
Dusal.0705s00006.1 33186300 Ribosomal protein L23/L25, N-terminal; Ribosomal protein... 0.25 OrthoFinder
OT_08G04160.1 No alias Ribosomal protein L25/L23; Ribosomal protein L23/L25,... 0.19 OrthoFinder
PTI_08G02770.1 No alias Ribosomal protein L25/L23; Ribosomal protein L23/L25,... 0.24 OrthoFinder
Sro521_g159410.1 Contig1979.g16931 60S ribosomal protein L23A 0.4 OrthoFinder
Vocar.0002s0021.1 32890790 Ribosomal protein L25/L23; Ribosomal protein L23/L25,... 0.21 OrthoFinder
XM_002507915.1 MICPUN_91476, 91476 Ribosomal protein L23/L25, N-terminal; Ribosomal protein... 0.31 OrthoFinder
XM_003058530.1 MicpuC2_33613, 33613 Ribosomal protein L25/L23; Ribosomal protein L23/L25,... 0.12 OrthoFinder
lcl|LHPG02000015.1_cds_PRW34016.1_3146 PRW34016 60S ribosomal L23A 0.09 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8496143.1_2141 KAA8496143 60S ribosomal protein L23a 0.17 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000295 adenine nucleotide transmembrane transporter activity IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003747 translation release factor activity IEP Enrichment
MF GO:0005346 purine ribonucleotide transmembrane transporter activity IEP Enrichment
MF GO:0005347 ATP transmembrane transporter activity IEP Enrichment
MF GO:0005471 ATP:ADP antiporter activity IEP Enrichment
BP GO:0006415 translational termination IEP Enrichment
BP GO:0006862 nucleotide transport IEP Enrichment
MF GO:0008079 translation termination factor activity IEP Enrichment
MF GO:0008097 5S rRNA binding IEP Enrichment
MF GO:0008168 methyltransferase activity IEP Enrichment
MF GO:0008514 organic anion transmembrane transporter activity IEP Enrichment
MF GO:0015215 nucleotide transmembrane transporter activity IEP Enrichment
MF GO:0015216 purine nucleotide transmembrane transporter activity IEP Enrichment
MF GO:0015217 ADP transmembrane transporter activity IEP Enrichment
MF GO:0015301 anion:anion antiporter activity IEP Enrichment
MF GO:0015605 organophosphate ester transmembrane transporter activity IEP Enrichment
BP GO:0015748 organophosphate ester transport IEP Enrichment
CC GO:0015934 large ribosomal subunit IEP Enrichment
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Enrichment
MF GO:0019843 rRNA binding IEP Enrichment
BP GO:0022411 cellular component disassembly IEP Enrichment
BP GO:0032984 protein-containing complex disassembly IEP Enrichment
BP GO:0043624 cellular protein complex disassembly IEP Enrichment
CC GO:0044391 ribosomal subunit IEP Enrichment
MF GO:0140323 solute:anion antiporter activity IEP Enrichment
InterPro domains Description Start Stop
IPR013025 Ribosomal_L25/23 62 122
IPR005633 Ribosomal_L23/L25_N 5 53
No external refs found!