TP06G03960.1

Description : Coatomer, alpha subunit, C-terminal; Coatomer, WD associated region; WD40 repeat [Interproscan].

Gene families : OG_01_0001822 (OrthoFinder) Phylogenetic Tree(s): OG0001822_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: TP06G03960.1
Cluster	HCCA: Cluster_36

Target	Alias	Description	ECC score	Gene Family Method
Cre13.g565850	30784724, COPA1	Vesicle trafficking.Coat protein I (COPI) coatomer...	0.05	OrthoFinder
Cz02g40250.t1	No alias	Coatomer, WD associated region; WD40 repeat [Interproscan].	0.03	OrthoFinder
Dusal.1106s00003.1	33203689	WD40 repeat [Interproscan].	0.03	OrthoFinder
EOD15797	No alias	COPA1, alpha subunit of the coatomer [Ensembl].	0.08	OrthoFinder
OT_04G01560.1	No alias	Coatomer, WD associated region; Coatomer, alpha subunit,...	0.03	OrthoFinder
Sro669_g184560.1	Contig2091.g17828	Coatomer subunit alpha	0.12	OrthoFinder
Vocar.0028s0031.1	32895618	WD40 repeat; Coatomer, alpha subunit, C-terminal;...	0.04	OrthoFinder
lcl\|BLLF01001654.1_cds_GFH20541.1_15018	HaLaN_17680, GFH20541	Coatomer subunit alpha	0.02	OrthoFinder
lcl\|BLLF01001969.1_cds_GFH22100.1_16577	HaLaN_19511, GFH22100	Coatomer subunit alpha	0.03	OrthoFinder
lcl\|LHPG02000005.1_cds_PRW58160.1_7595	PRW58160	Coatomer subunit alpha-1	0.02	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005198	structural molecule activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0006886	intracellular protein transport	IEA	Interproscan
BP	GO:0008104	protein localization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015031	protein transport	None	Extended
BP	GO:0016192	vesicle-mediated transport	IEA	Interproscan
CC	GO:0030117	membrane coat	IEA	Interproscan
CC	GO:0030120	vesicle coat	None	Extended
CC	GO:0030126	COPI vesicle coat	IEA	Interproscan
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0033036	macromolecule localization	None	Extended
BP	GO:0045184	establishment of protein localization	None	Extended
BP	GO:0046907	intracellular transport	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended
CC	GO:0098796	membrane protein complex	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0004476	mannose-6-phosphate isomerase activity	IEP	Enrichment
MF	GO:0016860	intramolecular oxidoreductase activity	IEP	Enrichment
MF	GO:0016861	intramolecular oxidoreductase activity, interconverting aldoses and ketoses	IEP	Enrichment
CC	GO:0030118	clathrin coat	IEP	Enrichment
CC	GO:0030119	AP-type membrane coat adaptor complex	IEP	Enrichment
CC	GO:0030125	clathrin vesicle coat	IEP	Enrichment
CC	GO:0030130	clathrin coat of trans-Golgi network vesicle	IEP	Enrichment
CC	GO:0030131	clathrin adaptor complex	IEP	Enrichment
CC	GO:0030132	clathrin coat of coated pit	IEP	Enrichment
CC	GO:0098797	plasma membrane protein complex	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR001680	WD40_repeat	84	124
IPR001680	WD40_repeat	129	166
IPR001680	WD40_repeat	203	236
IPR001680	WD40_repeat	246	281
IPR001680	WD40_repeat	46	79
IPR006692	Coatomer_WD-assoc_reg	381	798
IPR010714	Coatomer_asu_C	866	1253

External Links

No external refs found!