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  5. TP06G01980.1

TP06G01980.1


Description : SNF2-related, N-terminal domain; Helicase, C-terminal [Interproscan].


Gene families : OG_01_0000017 (OrthoFinder) Phylogenetic Tree(s): OG0000017_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: TP06G01980.1
Cluster HCCA: Cluster_66

Target Alias Description ECC score Gene Family Method Actions
PTI_03G03660.1 No alias Helicase, C-terminal; SNF2-related, N-terminal domain... 0.03 OrthoFinder
SymbC1.scaffold1732.5 1732.5 SNF2-related, N-terminal domain; Helicase, C-terminal... 0.06 OrthoFinder
SymbC1.scaffold4675.1 4675.1 SNF2-related, N-terminal domain; Helicase, C-terminal... 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP Enrichment
MF GO:0005509 calcium ion binding IEP Enrichment
BP GO:0009451 RNA modification IEP Enrichment
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Enrichment
MF GO:0030515 snoRNA binding IEP Enrichment
BP GO:0042254 ribosome biogenesis IEP Enrichment
MF GO:0043169 cation binding IEP Enrichment
BP GO:0044085 cellular component biogenesis IEP Enrichment
MF GO:0046872 metal ion binding IEP Enrichment
BP GO:0071840 cellular component organization or biogenesis IEP Enrichment
InterPro domains Description Start Stop
IPR000330 SNF2_N 3 177
IPR001650 Helicase_C 199 312
No external refs found!