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  5. TP05G08660.1

TP05G08660.1


Description : Nonaspanin (TM9SF) [Interproscan].


Gene families : OG_01_0000721 (OrthoFinder) Phylogenetic Tree(s): OG0000721_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: TP05G08660.1
Cluster HCCA: Cluster_36

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000459.14 tig00000459_g1077.t1 Transmembrane 9 superfamily member 3 OS=Arabidopsis thaliana 0.03 OrthoFinder
Cre01.g024350 30789351 Transmembrane 9 superfamily member 2 OS=Arabidopsis thaliana 0.04 OrthoFinder
Cre14.g611850 30776730 Transmembrane 9 superfamily member 1 OS=Arabidopsis thaliana 0.02 OrthoFinder
Cz06g25030.t1 No alias Nonaspanin (TM9SF) [Interproscan]. 0.05 OrthoFinder
Cz07g27220.t1 No alias Nonaspanin (TM9SF) [Interproscan]. 0.03 OrthoFinder
OT_14G03030.1 No alias Nonaspanin (TM9SF) [Interproscan]. 0.02 OrthoFinder
PTI_04G05070.1 No alias Nonaspanin (TM9SF) [Interproscan]. 0.07 OrthoFinder
PTI_12G03830.1 No alias Nonaspanin (TM9SF) [Interproscan]. 0.03 OrthoFinder
Sro1226_g254240.1 Contig1389.g12815 Transmembrane 9 superfamily member 0.06 OrthoFinder
Sro219_g090580.1 Contig3313.g25998 9 superfamily member 1 0.08 OrthoFinder
Transcript_contig_53923 53923 Nonaspanin (TM9SF) [Interproscan]. 0.02 OrthoFinder
Transcript_contig_54473 54473 Nonaspanin (TM9SF) [Interproscan]. 0.03 OrthoFinder
Vocar.0059s0007.1 32893598 Nonaspanin (TM9SF) [Interproscan]. 0.04 OrthoFinder
lcl|BLLF01001525.1_cds_GFH19820.1_14297 HaLaN_16839, GFH19820 Transmembrane 9 superfamily member 0.01 OrthoFinder
lcl|BLLF01005479.1_cds_GFH31247.1_25724 HaLaN_30248, GFH31247 Transmembrane 9 superfamily member 0.02 OrthoFinder
lcl|BLLF01005479.1_cds_GFH31249.1_25726 HaLaN_30250, GFH31249 Transmembrane 9 superfamily member 0.02 OrthoFinder
lcl|LHPG02000026.1_cds_PRW18303.1_5817 PRW18303 Phagocytic receptor 1b 0.02 OrthoFinder

Type GO Term Name Evidence Source
CC GO:0016021 integral component of membrane IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003684 damaged DNA binding IEP Enrichment
MF GO:0003916 DNA topoisomerase activity IEP Enrichment
MF GO:0003917 DNA topoisomerase type I (single strand cut, ATP-independent) activity IEP Enrichment
CC GO:0005869 dynactin complex IEP Enrichment
CC GO:0005875 microtubule associated complex IEP Enrichment
BP GO:0006259 DNA metabolic process IEP Enrichment
BP GO:0006265 DNA topological change IEP Enrichment
BP GO:0006289 nucleotide-excision repair IEP Enrichment
BP GO:0006886 intracellular protein transport IEP Enrichment
BP GO:0008104 protein localization IEP Enrichment
BP GO:0010498 proteasomal protein catabolic process IEP Enrichment
BP GO:0015031 protein transport IEP Enrichment
BP GO:0016192 vesicle-mediated transport IEP Enrichment
MF GO:0016491 oxidoreductase activity IEP Enrichment
CC GO:0030117 membrane coat IEP Enrichment
CC GO:0030118 clathrin coat IEP Enrichment
CC GO:0030120 vesicle coat IEP Enrichment
CC GO:0030125 clathrin vesicle coat IEP Enrichment
CC GO:0030130 clathrin coat of trans-Golgi network vesicle IEP Enrichment
CC GO:0030132 clathrin coat of coated pit IEP Enrichment
BP GO:0030163 protein catabolic process IEP Enrichment
CC GO:0032991 protein-containing complex IEP Enrichment
BP GO:0033036 macromolecule localization IEP Enrichment
BP GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process IEP Enrichment
BP GO:0045184 establishment of protein localization IEP Enrichment
BP GO:0046907 intracellular transport IEP Enrichment
BP GO:0051641 cellular localization IEP Enrichment
BP GO:0051649 establishment of localization in cell IEP Enrichment
BP GO:0055114 obsolete oxidation-reduction process IEP Enrichment
BP GO:0071103 DNA conformation change IEP Enrichment
BP GO:0071702 organic substance transport IEP Enrichment
BP GO:0071705 nitrogen compound transport IEP Enrichment
CC GO:0098796 membrane protein complex IEP Enrichment
CC GO:0098797 plasma membrane protein complex IEP Enrichment
InterPro domains Description Start Stop
IPR004240 EMP70 48 566
No external refs found!