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  5. TP05G05130.1

TP05G05130.1


Description : Squalene/phytoene synthase [Interproscan].


Gene families : OG_01_0001265 (OrthoFinder) Phylogenetic Tree(s): OG0001265_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: TP05G05130.1
Cluster HCCA: Cluster_59

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00001093.21 tig00001093_g6898.t1 Secondary metabolism.terpenoids.terpenoid... 0.02 OrthoFinder
PTI_05G01930.1 No alias Squalene/phytoene synthase [Interproscan]. 0.03 OrthoFinder
Sro4_g003080.1 Contig3815.g29226 Phytoene synthase 2, chloroplastic (Fragment) 0.04 OrthoFinder
Transcript_contig_56701 56701 Squalene/phytoene synthase [Interproscan]. 0.01 OrthoFinder
XM_002508472.1 MICPUN_85839, 85839 Phytoene synthase (PSY1) 0.01 OrthoFinder
XM_003057236.1 MicpuC2_32317, 32317 Phytoene synthase (PSY1) 0.01 OrthoFinder
lcl|BLLF01001914.1_cds_GFH21835.1_16312 HaLaN_19207, GFH21835 Phytoene synthase 0.01 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003690 double-stranded DNA binding IEP Enrichment
BP GO:0006720 isoprenoid metabolic process IEP Enrichment
BP GO:0006721 terpenoid metabolic process IEP Enrichment
BP GO:0006813 potassium ion transport IEP Enrichment
BP GO:0008299 isoprenoid biosynthetic process IEP Enrichment
CC GO:0009507 chloroplast IEP Enrichment
CC GO:0009536 plastid IEP Enrichment
BP GO:0016114 terpenoid biosynthetic process IEP Enrichment
MF GO:0016725 oxidoreductase activity, acting on CH or CH2 groups IEP Enrichment
MF GO:0016779 nucleotidyltransferase activity IEP Enrichment
MF GO:0022890 inorganic cation transmembrane transporter activity IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
MF GO:0046422 violaxanthin de-epoxidase activity IEP Enrichment
MF GO:0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity IEP Enrichment
MF GO:0052592 oxidoreductase activity, acting on CH or CH2 groups, with an iron-sulfur protein as acceptor IEP Enrichment
MF GO:0070569 uridylyltransferase activity IEP Enrichment

No InterPro domains available for this sequence

No external refs found!