TP05G01880.1


Description : Ribosomal protein L4/L1e; 60S ribosomal protein L4, C-terminal domain [Interproscan].


Gene families : OG_01_0002264 (OrthoFinder) Phylogenetic Tree(s): OG0002264_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: TP05G01880.1
Cluster HCCA: Cluster_100

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00022075.53 tig00022075_g23614.t1 Protein biosynthesis.cytosolic ribosome.large subunit... 0.11 OrthoFinder
Cre09.g397697 30781440, RPL4 Protein biosynthesis.cytosolic ribosome.large subunit... 0.11 OrthoFinder
Cz16g02120.t1 No alias Ribosomal protein L4/L1e; 60S ribosomal protein L4,... 0.05 OrthoFinder
Dusal.0242s00016.1 33196725 Ribosomal protein L4/L1e; 60S ribosomal protein L4,... 0.11 OrthoFinder
EOD06962 No alias 60S ribosomal protein L4, C-terminal domain; Ribosomal... 0.03 OrthoFinder
OT_16G01500.1 No alias Ribosomal protein L4/L1e; 60S ribosomal protein L4,... 0.1 OrthoFinder
PTI_00G01550.1 No alias 60S ribosomal protein L4, C-terminal domain; Ribosomal... 0.14 OrthoFinder
PTI_12G00050.1 No alias 60S ribosomal protein L4, C-terminal domain; Ribosomal... 0.16 OrthoFinder
Sro621_g176640.1 Contig1511.g13781 60S ribosomal protein L4 0.2 OrthoFinder
SymbC1.scaffold968.3 968.3 Ribosomal protein L4/L1e; 60S ribosomal protein L4,... 0.03 OrthoFinder
Vocar.0009s0214.1 32893255 60S ribosomal protein L4, C-terminal domain; Ribosomal... 0.04 OrthoFinder
XM_002506518.1 MICPUN_96004, 96004 Ribosomal protein L4/L1e; 60S ribosomal protein L4,... 0.08 OrthoFinder
XM_003063189.1 MicpuC2_45929, 45929 60S ribosomal protein L4, C-terminal domain; Ribosomal... 0.06 OrthoFinder
lcl|BLLF01002159.1_cds_GFH22946.1_17423 HaLaN_20485, GFH22946 Component of cytosolic 80S ribosome and 60S large subunit 0.03 OrthoFinder
lcl|LHPG02000017.1_cds_PRW33309.1_3617 PRW33309 60S ribosomal L4 isoform B 0.05 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8495171.1_3701 KAA8495171 60S ribosomal protein L4-A 0.06 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
Type GO Term Name Evidence Source
BP GO:0000105 histidine biosynthetic process IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003746 translation elongation factor activity IEP Enrichment
MF GO:0003924 GTPase activity IEP Enrichment
MF GO:0004019 adenylosuccinate synthase activity IEP Enrichment
MF GO:0005525 GTP binding IEP Enrichment
BP GO:0006417 regulation of translation IEP Enrichment
BP GO:0006448 regulation of translational elongation IEP Enrichment
BP GO:0006449 regulation of translational termination IEP Enrichment
BP GO:0006547 histidine metabolic process IEP Enrichment
MF GO:0008097 5S rRNA binding IEP Enrichment
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP Enrichment
CC GO:0009507 chloroplast IEP Enrichment
CC GO:0009536 plastid IEP Enrichment
BP GO:0009891 positive regulation of biosynthetic process IEP Enrichment
BP GO:0009893 positive regulation of metabolic process IEP Enrichment
BP GO:0010557 positive regulation of macromolecule biosynthetic process IEP Enrichment
BP GO:0010604 positive regulation of macromolecule metabolic process IEP Enrichment
BP GO:0010608 posttranscriptional regulation of gene expression IEP Enrichment
BP GO:0010628 positive regulation of gene expression IEP Enrichment
MF GO:0015098 molybdate ion transmembrane transporter activity IEP Enrichment
BP GO:0015689 molybdate ion transport IEP Enrichment
MF GO:0016462 pyrophosphatase activity IEP Enrichment
MF GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor IEP Enrichment
MF GO:0016874 ligase activity IEP Enrichment
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP Enrichment
MF GO:0017111 nucleoside-triphosphatase activity IEP Enrichment
MF GO:0019001 guanyl nucleotide binding IEP Enrichment
MF GO:0019843 rRNA binding IEP Enrichment
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Enrichment
BP GO:0030001 metal ion transport IEP Enrichment
BP GO:0031325 positive regulation of cellular metabolic process IEP Enrichment
BP GO:0031328 positive regulation of cellular biosynthetic process IEP Enrichment
BP GO:0032268 regulation of cellular protein metabolic process IEP Enrichment
BP GO:0032270 positive regulation of cellular protein metabolic process IEP Enrichment
MF GO:0032561 guanyl ribonucleotide binding IEP Enrichment
BP GO:0034248 regulation of cellular amide metabolic process IEP Enrichment
BP GO:0034250 positive regulation of cellular amide metabolic process IEP Enrichment
BP GO:0042254 ribosome biogenesis IEP Enrichment
MF GO:0043021 ribonucleoprotein complex binding IEP Enrichment
MF GO:0043022 ribosome binding IEP Enrichment
BP GO:0043243 positive regulation of protein-containing complex disassembly IEP Enrichment
BP GO:0043244 regulation of protein-containing complex disassembly IEP Enrichment
BP GO:0044085 cellular component biogenesis IEP Enrichment
MF GO:0044877 protein-containing complex binding IEP Enrichment
BP GO:0045727 positive regulation of translation IEP Enrichment
BP GO:0045901 positive regulation of translational elongation IEP Enrichment
BP GO:0045905 positive regulation of translational termination IEP Enrichment
BP GO:0048518 positive regulation of biological process IEP Enrichment
BP GO:0048522 positive regulation of cellular process IEP Enrichment
BP GO:0051128 regulation of cellular component organization IEP Enrichment
BP GO:0051130 positive regulation of cellular component organization IEP Enrichment
BP GO:0051173 positive regulation of nitrogen compound metabolic process IEP Enrichment
BP GO:0051246 regulation of protein metabolic process IEP Enrichment
BP GO:0051247 positive regulation of protein metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR025755 Ribos_L4_C_dom 266 338
IPR002136 Ribosomal_L4/L1e 22 259
No external refs found!