TP05G00420.1

Description : Ribosomal protein S17/S11; 40S ribosomal protein S11, N-terminal [Interproscan].

Gene families : OG_01_0003480 (OrthoFinder) Phylogenetic Tree(s): OG0003480_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: TP05G00420.1
Cluster	HCCA: Cluster_24

Target	Alias	Description	ECC score	Gene Family Method
Cpa\|evm.model.tig00000551.22	tig00000551_g2043.t1	Protein biosynthesis.cytosolic ribosome.small subunit...	0.26	OrthoFinder
Cre12.g514500	30792578, RPS11	Protein biosynthesis.cytosolic ribosome.small subunit...	0.36	OrthoFinder
Cz02g12020.t1	No alias	Ribosomal protein S17/S11; 40S ribosomal protein S11,...	0.26	OrthoFinder
Dusal.0778s00006.1	33199653	Ribosomal protein S17/S11; 40S ribosomal protein S11,...	0.05	OrthoFinder
EOD05251	No alias	Ribosomal protein S17/S11; 40S ribosomal protein S11,...	0.21	OrthoFinder
EOD19139	No alias	Ribosomal protein S17/S11; 40S ribosomal protein S11,...	0.01	OrthoFinder
OT_06G01520.1	No alias	40S ribosomal protein S11, N-terminal; Ribosomal protein...	0.25	OrthoFinder
PTI_12G03740.1	No alias	Ribosomal protein S17/S11; 40S ribosomal protein S11,...	0.3	OrthoFinder
Sro154_g070110.1	Contig2716.g21889	40S ribosomal protein S11	0.37	OrthoFinder
Vocar.0006s0303.1	32893913	Ribosomal protein S17/S11; 40S ribosomal protein S11,...	0.05	OrthoFinder
XM_002501400.1	MICPUN_81184, 81184	Ribosomal protein	0.3	OrthoFinder
XM_003059434.1	MicpuC2_33883, 33883	Ribosomal protein S17/S11; 40S ribosomal protein S11,...	0.13	OrthoFinder
lcl\|BLLF01002834.1_cds_GFH25508.1_19985	HaLaN_23487, GFH25508	40S ribosomal protein S11	0.02	OrthoFinder
lcl\|BLLF01005325.1_cds_GFH31049.1_25526	HaLaN_30009, GFH31049	Ribosomal_S17_N domain-containing protein	0.11	OrthoFinder
lcl\|LHPG02000001.1_cds_PRW61173.1_440	PRW61173	40S ribosomal S11	0.23	OrthoFinder
lcl\|VRMN01000015.1_cds_KAA8491213.1_5841	KAA8491213	40S ribosomal protein S11	0.17	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	Enrichment
MF	GO:0003723	RNA binding	IEP	Enrichment
MF	GO:0003883	CTP synthase activity	IEP	Enrichment
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	Enrichment
BP	GO:0006220	pyrimidine nucleotide metabolic process	IEP	Enrichment
BP	GO:0006221	pyrimidine nucleotide biosynthetic process	IEP	Enrichment
BP	GO:0006360	transcription by RNA polymerase I	IEP	Enrichment
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	Enrichment
MF	GO:0008097	5S rRNA binding	IEP	Enrichment
MF	GO:0008168	methyltransferase activity	IEP	Enrichment
MF	GO:0008173	RNA methyltransferase activity	IEP	Enrichment
CC	GO:0015934	large ribosomal subunit	IEP	Enrichment
BP	GO:0016070	RNA metabolic process	IEP	Enrichment
MF	GO:0016741	transferase activity, transferring one-carbon groups	IEP	Enrichment
MF	GO:0016874	ligase activity	IEP	Enrichment
MF	GO:0019843	rRNA binding	IEP	Enrichment
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	Enrichment
BP	GO:0042254	ribosome biogenesis	IEP	Enrichment
BP	GO:0044085	cellular component biogenesis	IEP	Enrichment
CC	GO:0044391	ribosomal subunit	IEP	Enrichment
BP	GO:0046483	heterocycle metabolic process	IEP	Enrichment
BP	GO:0072527	pyrimidine-containing compound metabolic process	IEP	Enrichment
BP	GO:0072528	pyrimidine-containing compound biosynthetic process	IEP	Enrichment
BP	GO:0090304	nucleic acid metabolic process	IEP	Enrichment
MF	GO:0140098	catalytic activity, acting on RNA	IEP	Enrichment
BP	GO:1901360	organic cyclic compound metabolic process	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR032440	Ribosomal_S11_N	13	79
IPR000266	Ribosomal_S17/S11	81	148

External Links

No external refs found!

TP05G00420.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation