TP04G08470.1


Description : Ribosomal protein L13e [Interproscan].


Gene families : OG_01_0002835 (OrthoFinder) Phylogenetic Tree(s): OG0002835_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: TP04G08470.1
Cluster HCCA: Cluster_24

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020629.36 tig00020629_g12358.t1 Protein biosynthesis.cytosolic ribosome.large subunit... 0.29 OrthoFinder
Cre14.g630100 30776357, RPL13 Protein biosynthesis.cytosolic ribosome.large subunit... 0.08 OrthoFinder
Cz15g22130.t1 No alias Ribosomal protein L13e; Tetratricopeptide repeat [Interproscan]. 0.26 OrthoFinder
Dusal.0041s00032.1 33194551 Ribosomal protein L13e [Interproscan]. 0.15 OrthoFinder
EOD29349 No alias 60S ribosomal protein L13 [Ensembl]. 0.21 OrthoFinder
OT_05G05020.1 No alias Ribosomal protein L13e [Interproscan]. 0.22 OrthoFinder
PTI_20G02450.1 No alias Ribosomal protein L13e [Interproscan]. 0.42 OrthoFinder
Sro307_g113390.1 Contig2839.g22809 60S ribosomal protein L13-1 0.42 OrthoFinder
SymbC1.scaffold5728.4 5728.4 Ribosomal protein L13e [Interproscan]. 0.1 OrthoFinder
Vocar.0006s0140.1 32894315 Ribosomal protein L13e [Interproscan]. 0.09 OrthoFinder
XM_002502479.1 MICPUN_90780, 90780 Ribosomal protein L13e [Interproscan]. 0.3 OrthoFinder
XM_003056868.1 MicpuC2_62462, 62462 Ribosomal protein L13e [Interproscan]. 0.1 OrthoFinder
lcl|BLLF01001412.1_cds_GFH19137.1_13614 HaLaN_16038, GFH19137 60S ribosomal protein L13 0.12 OrthoFinder
lcl|BLLF01008736.1_cds_GFH33502.1_27979 HaLaN_32883, GFH33502 60S ribosomal protein L13 0.04 OrthoFinder
lcl|LHPG02000001.1_cds_PRW61522.1_672 PRW61522 60S ribosomal L13-2 0.09 OrthoFinder
lcl|VRMN01000011.1_cds_KAA8491921.1_4929 KAA8491921 60S ribosomal protein L13-1 0.22 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
CC GO:0005741 mitochondrial outer membrane IEP Enrichment
CC GO:0015934 large ribosomal subunit IEP Enrichment
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP Enrichment
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP Enrichment
MF GO:0019843 rRNA binding IEP Enrichment
CC GO:0019867 outer membrane IEP Enrichment
CC GO:0031966 mitochondrial membrane IEP Enrichment
CC GO:0031968 organelle outer membrane IEP Enrichment
CC GO:0044391 ribosomal subunit IEP Enrichment
MF GO:0051287 NAD binding IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
CC GO:0098588 bounding membrane of organelle IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
InterPro domains Description Start Stop
IPR001380 Ribosomal_L13e 7 189
No external refs found!