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  5. TP04G08460.1

TP04G08460.1


Description : Ribosomal protein S15; Ribosomal protein S13/S15, N-terminal [Interproscan].


Gene families : OG_01_0003390 (OrthoFinder) Phylogenetic Tree(s): OG0003390_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: TP04G08460.1
Cluster HCCA: Cluster_24

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000489.15 tig00000489_g1374.t1 40S ribosomal protein S13 OS=Glycine max 0.06 OrthoFinder
Cre07.g331900 30774339, RPS13 Protein biosynthesis.cytosolic ribosome.small subunit... 0.34 OrthoFinder
Cz07g16040.t1 No alias Ribosomal protein S15 [Interproscan]. 0.19 OrthoFinder
Dusal.0017s00026.1 33200512 Ribosomal protein S15; Ribosomal protein S13/S15,... 0.17 OrthoFinder
EOD30715 No alias Ribosomal protein S15; Ribosomal protein S13/S15,... 0.08 OrthoFinder
EOD34926 No alias 40S ribosomal protein S13 [Ensembl]. 0.08 OrthoFinder
OT_01G03170.1 No alias Ribosomal protein S13/S15, N-terminal; Ribosomal protein... 0.17 OrthoFinder
PTI_01G02690.1 No alias Ribosomal protein S13/S15, N-terminal; Ribosomal protein... 0.25 OrthoFinder
Sro611_g175300.1 Contig1882.g16411 40S ribosomal protein S13 0.3 OrthoFinder
SymbC1.scaffold2720.1 2720.1 Glycosyltransferase, DXD sugar-binding motif; Ribosomal... 0.05 OrthoFinder
XM_002504263.1 MICPUN_108906, 108906 Ribosomal protein S15; Ribosomal protein S13/S15,... 0.31 OrthoFinder
XM_003063730.1 MicpuC2_49744, 49744 Ribosomal protein S13/S15, N-terminal; Ribosomal protein... 0.08 OrthoFinder
lcl|BLLF01005706.1_cds_GFH31540.1_26017 HaLaN_30603, GFH31540 Ribosomal_S13_N domain-containing protein 0.06 OrthoFinder
lcl|LHPG02000009.1_cds_PRW56017.1_9996 PRW56017 40S ribosomal S13 0.04 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8495591.1_1589 KAA8495591 40S ribosomal protein S13 0.18 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000295 adenine nucleotide transmembrane transporter activity IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0004807 triose-phosphate isomerase activity IEP Enrichment
MF GO:0005346 purine ribonucleotide transmembrane transporter activity IEP Enrichment
MF GO:0005347 ATP transmembrane transporter activity IEP Enrichment
MF GO:0005471 ATP:ADP antiporter activity IEP Enrichment
BP GO:0006862 nucleotide transport IEP Enrichment
MF GO:0008514 organic anion transmembrane transporter activity IEP Enrichment
MF GO:0015215 nucleotide transmembrane transporter activity IEP Enrichment
MF GO:0015216 purine nucleotide transmembrane transporter activity IEP Enrichment
MF GO:0015217 ADP transmembrane transporter activity IEP Enrichment
MF GO:0015301 anion:anion antiporter activity IEP Enrichment
MF GO:0015605 organophosphate ester transmembrane transporter activity IEP Enrichment
BP GO:0015748 organophosphate ester transport IEP Enrichment
MF GO:0015932 nucleobase-containing compound transmembrane transporter activity IEP Enrichment
CC GO:0015934 large ribosomal subunit IEP Enrichment
MF GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor IEP Enrichment
MF GO:0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses IEP Enrichment
MF GO:0019843 rRNA binding IEP Enrichment
CC GO:0044391 ribosomal subunit IEP Enrichment
MF GO:0140323 solute:anion antiporter activity IEP Enrichment
MF GO:1901505 carbohydrate derivative transmembrane transporter activity IEP Enrichment
InterPro domains Description Start Stop
IPR000589 Ribosomal_S15 74 146
IPR012606 Ribosomal_S13/S15_N 1 60
No external refs found!