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  5. TP04G07750.1

TP04G07750.1


Description : K Homology domain, type 2; Ribosomal protein S3, C-terminal [Interproscan].


Gene families : OG_01_0003293 (OrthoFinder) Phylogenetic Tree(s): OG0003293_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: TP04G07750.1
Cluster HCCA: Cluster_24

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00021462.41 tig00021462_g21604.t1 Protein biosynthesis.cytosolic ribosome.small subunit... 0.29 OrthoFinder
Cre02.g102250 30785015, RPS3 Protein biosynthesis.cytosolic ribosome.small subunit... 0.27 OrthoFinder
Cz02g33150.t1 No alias K Homology domain, type 2; Ribosomal protein S3,... 0.24 OrthoFinder
Dusal.0669s00001.1 33197930 Ribosomal protein S3, C-terminal; K Homology domain,... 0.1 OrthoFinder
EOD31013 No alias Ribosomal protein S3, C-terminal; K Homology domain,... 0.12 OrthoFinder
OT_04G01280.1 No alias K Homology domain, type 2; Ribosomal protein S3,... 0.18 OrthoFinder
PTI_04G00160.1 No alias K Homology domain, type 2; Ribosomal protein S3,... 0.33 OrthoFinder
Sro694_g188530.1 Contig4437.g33306 40S ribosomal protein S3 0.37 OrthoFinder
Vocar.0002s0314.1 32891162 K Homology domain, type 2; Ribosomal protein S3,... 0.18 OrthoFinder
XM_002508158.1 MICPUN_91459, 91459 Ribosomal protein S3, C-terminal; K Homology domain,... 0.26 OrthoFinder
XM_003057639.1 MicpuC2_26239, 26239 K Homology domain, type 2; Ribosomal protein S3,... 0.11 OrthoFinder
lcl|VRMN01000006.1_cds_KAA8493723.1_4485 KAA8493723 40S ribosomal protein S3-A 0.29 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0003735 structural constituent of ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004807 triose-phosphate isomerase activity IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
CC GO:0005840 ribosome IEP Enrichment
CC GO:0015934 large ribosomal subunit IEP Enrichment
MF GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor IEP Enrichment
MF GO:0016854 racemase and epimerase activity IEP Enrichment
MF GO:0016857 racemase and epimerase activity, acting on carbohydrates and derivatives IEP Enrichment
MF GO:0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses IEP Enrichment
MF GO:0019843 rRNA binding IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043228 non-membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Enrichment
CC GO:0044391 ribosomal subunit IEP Enrichment
CC GO:0110165 cellular anatomical entity IEP Enrichment
InterPro domains Description Start Stop
IPR004044 KH_dom_type_2 24 98
IPR001351 Ribosomal_S3_C 111 192
No external refs found!