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  5. TP04G07120.1

TP04G07120.1


Description : Clathrin/coatomer adaptor, adaptin-like, N-terminal; Coatomer beta subunit, C-terminal; Coatomer beta subunit, appendage platform domain [Interproscan].


Gene families : OG_01_0002435 (OrthoFinder) Phylogenetic Tree(s): OG0002435_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: TP04G07120.1
Cluster HCCA: Cluster_36

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020553.156 tig00020553_g10647.t1 Vesicle trafficking.Coat protein I (COPI) coatomer... 0.02 OrthoFinder
Cre04.g217921 30791161, COPB1 Vesicle trafficking.Coat protein I (COPI) coatomer... 0.03 OrthoFinder
Cz05g37150.t1 No alias Coatomer beta subunit, appendage platform domain;... 0.02 OrthoFinder
Dusal.0035s00026.1 33196664 Coatomer beta subunit, appendage platform domain;... 0.02 OrthoFinder
EOD12644 No alias COPB1, beta subunit of the coatomer [Ensembl]. 0.02 OrthoFinder
EOD12708 No alias COPB1, beta subunit of the coatomer [Ensembl]. 0.02 OrthoFinder
OT_04G02630.1 No alias Coatomer beta subunit, appendage platform domain;... 0.04 OrthoFinder
PTI_09G00360.1 No alias Coatomer beta subunit, C-terminal; Coatomer beta... 0.03 OrthoFinder
Sro1540_g280870.1 Contig2880.g23009 Coatomer subunit beta 0.07 OrthoFinder
Vocar.0046s0045.1 32892975 Coatomer beta subunit, appendage platform domain;... 0.02 OrthoFinder
lcl|BLLF01001130.1_cds_GFH17326.1_11803 HaLaN_13936, GFH17326 Beta-coat protein 0.02 OrthoFinder
lcl|LHPG02000007.1_cds_PRW57265.1_8886 PRW57265 Coatomer subunit beta-1 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005198 structural molecule activity IEA Interproscan
BP GO:0006886 intracellular protein transport IEA Interproscan
BP GO:0016192 vesicle-mediated transport IEA Interproscan
CC GO:0030117 membrane coat IEA Interproscan
CC GO:0030126 COPI vesicle coat IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0008289 lipid binding IEP Enrichment
MF GO:0010181 FMN binding IEP Enrichment
CC GO:0030118 clathrin coat IEP Enrichment
CC GO:0030125 clathrin vesicle coat IEP Enrichment
CC GO:0030130 clathrin coat of trans-Golgi network vesicle IEP Enrichment
CC GO:0030132 clathrin coat of coated pit IEP Enrichment
MF GO:0043531 ADP binding IEP Enrichment
CC GO:0098797 plasma membrane protein complex IEP Enrichment
InterPro domains Description Start Stop
IPR029446 COPB1_appendage_platform_dom 709 837
IPR002553 Clathrin/coatomer_adapt-like_N 3 471
IPR011710 Coatomer_bsu_C 566 703
No external refs found!