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  5. Cpa|evm.model.tig00000241.15

Cpa|evm.model.tig00000241.15 (tig00000241_g20874.t1)


Aliases : tig00000241_g20874.t1

Description : RNA biosynthesis.DNA-dependent RNA polymerase (Pol) complexes.Pol II catalytic subunits.subunit 1


Gene families : OG_01_0000697 (OrthoFinder) Phylogenetic Tree(s): OG0000697_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00000241.15
Cluster HCCA: Cluster_199

Target Alias Description ECC score Gene Family Method Actions
Cre03.g165750 30786879 RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... 0.04 OrthoFinder
Cre16.g680900 30777306, RPB1 RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... 0.02 OrthoFinder
Cz01g33020.t1 No alias RNA polymerase Rpb1, domain 4; RNA polymerase, alpha... 0.02 OrthoFinder
Cz03g13040.t1 No alias RNA polymerase II, heptapeptide repeat, eukaryotic; RNA... 0.03 OrthoFinder
Dusal.0157s00011.1 33200035 RNA polymerase Rpb1, domain 1; RNA polymerase, alpha... 0.04 OrthoFinder
Dusal.0197s00003.1 33188524 RNA polymerase Rpb1, domain 1; RNA polymerase, alpha... 0.02 OrthoFinder
EOD13395 No alias RNA polymerase Rpb1, domain 4; RNA polymerase Rpb1,... 0.02 OrthoFinder
EOD16843 No alias RNA polymerase Rpb1, domain 4; RNA polymerase Rpb1,... 0.01 OrthoFinder
OT_02G03580.1 No alias RNA polymerase Rpb1, domain 4; RNA polymerase Rpb1,... 0.02 OrthoFinder
OT_10G01340.1 No alias RNA polymerase Rpb1, domain 4; RNA polymerase Rpb1,... 0.03 OrthoFinder
PTI_12G01840.1 No alias RNA polymerase Rpb1, domain 3; RNA polymerase Rpb1,... 0.03 OrthoFinder
Sro544_g163690.1 Contig3214.g25423 DNA-directed RNA polymerase subunit beta' (Fragment) 0.01 OrthoFinder
XM_002503483.1 MICPUN_94662, 94662 RNA polymerase Rpb1, domain 6; RNA polymerase Rpb1,... 0.04 OrthoFinder
XM_003055558.1 MicpuC2_45178, 45178 RNA polymerase Rpb1, domain 3; RNA polymerase Rpb1,... 0.02 OrthoFinder
XM_003057453.1 MicpuC2_46863, 46863 RNA polymerase Rpb1, domain 3; RNA polymerase Rpb1,... 0.02 OrthoFinder
lcl|BLLF01001189.1_cds_GFH17710.1_12187 HaLaN_14398, GFH17710 DNA-directed RNA polymerase subunit 0.02 OrthoFinder
lcl|BLLF01002332.1_cds_GFH23677.1_18154 HaLaN_21329, GFH23677 DNA-directed RNA polymerase subunit 0.02 OrthoFinder
lcl|LHPG02000005.1_cds_PRW58100.1_7994 PRW58100 DNA-directed RNA polymerase III largest subunit 0.01 OrthoFinder
lcl|LHPG02000007.1_cds_PRW57000.1_9043 PRW57000 DNA-directed RNA polymerase II subunit 1 0.05 OrthoFinder
lcl|VRMN01000010.1_cds_KAA8492229.1_5412 KAA8492229 DNA-directed RNA polymerase III subunit RPC1 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEA Interproscan
BP GO:0006351 transcription, DNA-templated IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Enrichment
MF GO:0003774 motor activity IEP Enrichment
MF GO:0004420 hydroxymethylglutaryl-CoA reductase (NADPH) activity IEP Enrichment
MF GO:0004527 exonuclease activity IEP Enrichment
MF GO:0004672 protein kinase activity IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
BP GO:0006163 purine nucleotide metabolic process IEP Enrichment
BP GO:0006464 cellular protein modification process IEP Enrichment
BP GO:0006508 proteolysis IEP Enrichment
BP GO:0009150 purine ribonucleotide metabolic process IEP Enrichment
BP GO:0009259 ribonucleotide metabolic process IEP Enrichment
BP GO:0015936 coenzyme A metabolic process IEP Enrichment
MF GO:0016301 kinase activity IEP Enrichment
CC GO:0016459 myosin complex IEP Enrichment
MF GO:0016462 pyrophosphatase activity IEP Enrichment
BP GO:0016579 protein deubiquitination IEP Enrichment
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Enrichment
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Enrichment
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
MF GO:0017111 nucleoside-triphosphatase activity IEP Enrichment
BP GO:0019693 ribose phosphate metabolic process IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
BP GO:0033865 nucleoside bisphosphate metabolic process IEP Enrichment
BP GO:0033875 ribonucleoside bisphosphate metabolic process IEP Enrichment
BP GO:0034032 purine nucleoside bisphosphate metabolic process IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
BP GO:0036211 protein modification process IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
BP GO:0043412 macromolecule modification IEP Enrichment
BP GO:0044267 cellular protein metabolic process IEP Enrichment
BP GO:0070646 protein modification by small protein removal IEP Enrichment
BP GO:0070647 protein modification by small protein conjugation or removal IEP Enrichment
BP GO:0072521 purine-containing compound metabolic process IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
MF GO:0140096 catalytic activity, acting on a protein IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
BP GO:1901564 organonitrogen compound metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR007081 RNA_pol_Rpb1_5 757 1326
IPR007080 RNA_pol_Rpb1_1 13 275
IPR007083 RNA_pol_Rpb1_4 646 750
IPR007080 RNA_pol_Rpb1_1 273 319
IPR007073 RNA_pol_Rpb1_7 1068 1205
IPR007075 RNA_pol_Rpb1_6 898 985
IPR007075 RNA_pol_Rpb1_6 823 897
IPR007066 RNA_pol_Rpb1_3 481 619
IPR000722 RNA_pol_asu 321 477
No external refs found!