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  5. TP04G06000.1

TP04G06000.1


Description : Nucleoporin FG repeat [Interproscan].


Gene families : OG_01_0020414 (OrthoFinder) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: TP04G06000.1
Cluster HCCA: Cluster_36

Target Alias Description ECC score Gene Family Method Actions
Sro359_g126140.1 Contig295.g3875 Hypothetical protein 0.02 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003684 damaged DNA binding IEP Enrichment
MF GO:0005049 nuclear export signal receptor activity IEP Enrichment
CC GO:0005869 dynactin complex IEP Enrichment
CC GO:0005875 microtubule associated complex IEP Enrichment
BP GO:0006289 nucleotide-excision repair IEP Enrichment
BP GO:0006325 chromatin organization IEP Enrichment
BP GO:0006354 DNA-templated transcription, elongation IEP Enrichment
BP GO:0006368 transcription elongation from RNA polymerase II promoter IEP Enrichment
BP GO:0007017 microtubule-based process IEP Enrichment
CC GO:0008023 transcription elongation factor complex IEP Enrichment
MF GO:0010181 FMN binding IEP Enrichment
BP GO:0010498 proteasomal protein catabolic process IEP Enrichment
MF GO:0016491 oxidoreductase activity IEP Enrichment
BP GO:0016569 covalent chromatin modification IEP Enrichment
BP GO:0016570 histone modification IEP Enrichment
CC GO:0016593 Cdc73/Paf1 complex IEP Enrichment
BP GO:0030001 metal ion transport IEP Enrichment
BP GO:0030163 protein catabolic process IEP Enrichment
CC GO:0030286 dynein complex IEP Enrichment
CC GO:0032991 protein-containing complex IEP Enrichment
BP GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process IEP Enrichment
BP GO:0055114 obsolete oxidation-reduction process IEP Enrichment
MF GO:0140104 molecular carrier activity IEP Enrichment
MF GO:0140142 nucleocytoplasmic carrier activity IEP Enrichment
MF GO:0140597 protein carrier activity IEP Enrichment
InterPro domains Description Start Stop
IPR025574 Nucleoporin_FG_rpt 89 159
IPR025574 Nucleoporin_FG_rpt 610 688
IPR025574 Nucleoporin_FG_rpt 562 608
IPR025574 Nucleoporin_FG_rpt 4 77
No external refs found!