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  5. TP04G04550.1

TP04G04550.1


Description : Ribosomal protein 50S-L18Ae/60S-L20/60S-L18A [Interproscan].


Gene families : OG_01_0002951 (OrthoFinder) Phylogenetic Tree(s): OG0002951_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: TP04G04550.1
Cluster HCCA: Cluster_24

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000615.59 tig00000615_g2588.t1 Protein biosynthesis.cytosolic ribosome.large subunit... 0.18 OrthoFinder
Cre01.g047750 30789695, RPL18a Protein biosynthesis.cytosolic ribosome.large subunit... 0.23 OrthoFinder
Dusal.0268s00002.1 33190613 Ribosomal protein 50S-L18Ae/60S-L20/60S-L18A [Interproscan]. 0.02 OrthoFinder
EOD26288 No alias Ribosomal protein 50S-L18Ae/60S-L20/60S-L18A [Interproscan]. 0.06 OrthoFinder
EOD38969 No alias Ribosomal protein 50S-L18Ae/60S-L20/60S-L18A [Interproscan]. 0.04 OrthoFinder
OT_07G00180.1 No alias Ribosomal protein 50S-L18Ae/60S-L20/60S-L18A [Interproscan]. 0.12 OrthoFinder
PTI_09G04120.1 No alias Ribosomal protein 50S-L18Ae/60S-L20/60S-L18A [Interproscan]. 0.17 OrthoFinder
Sro569_g168300.1 Contig1581.g14356 60S ribosomal protein L18a 0.21 OrthoFinder
UNPLg00655.t1 No alias Ribosomal protein 50S-L18Ae/60S-L20/60S-L18A [Interproscan]. 0.14 OrthoFinder
Vocar.0001s0546.1 32884270 Ribosomal protein 50S-L18Ae/60S-L20/60S-L18A [Interproscan]. 0.11 OrthoFinder
XM_002501183.1 MICPUN_57540, 57540 Ribosomal protein 50S-L18Ae/60S-L20/60S-L18A [Interproscan]. 0.16 OrthoFinder
XM_003062266.1 MicpuC2_49713, 49713 Ribosomal protein 50S-L18Ae/60S-L20/60S-L18A [Interproscan]. 0.06 OrthoFinder
lcl|BLLF01009296.1_cds_GFH33674.1_28151 HaLaN_33080, GFH33674 60S ribosomal protein L18a-2 0.02 OrthoFinder
lcl|LHPG02000007.1_cds_PRW57226.1_9365 PRW57226 60S ribosomal L18a-2 0.09 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8495548.1_1546 KAA8495548 60S ribosomal protein L18a 0.12 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000139 Golgi membrane IEP Enrichment
MF GO:0003924 GTPase activity IEP Enrichment
MF GO:0004813 alanine-tRNA ligase activity IEP Enrichment
MF GO:0005338 nucleotide-sugar transmembrane transporter activity IEP Enrichment
MF GO:0005525 GTP binding IEP Enrichment
CC GO:0005741 mitochondrial outer membrane IEP Enrichment
BP GO:0006419 alanyl-tRNA aminoacylation IEP Enrichment
BP GO:0006766 vitamin metabolic process IEP Enrichment
BP GO:0006767 water-soluble vitamin metabolic process IEP Enrichment
BP GO:0006772 thiamine metabolic process IEP Enrichment
BP GO:0009110 vitamin biosynthetic process IEP Enrichment
BP GO:0009228 thiamine biosynthetic process IEP Enrichment
CC GO:0009654 photosystem II oxygen evolving complex IEP Enrichment
BP GO:0010109 regulation of photosynthesis IEP Enrichment
MF GO:0015165 pyrimidine nucleotide-sugar transmembrane transporter activity IEP Enrichment
BP GO:0015780 nucleotide-sugar transmembrane transport IEP Enrichment
BP GO:0015931 nucleobase-containing compound transport IEP Enrichment
MF GO:0015932 nucleobase-containing compound transmembrane transporter activity IEP Enrichment
MF GO:0016462 pyrophosphatase activity IEP Enrichment
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Enrichment
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Enrichment
MF GO:0017111 nucleoside-triphosphatase activity IEP Enrichment
MF GO:0019001 guanyl nucleotide binding IEP Enrichment
MF GO:0019843 rRNA binding IEP Enrichment
CC GO:0019867 outer membrane IEP Enrichment
CC GO:0019898 extrinsic component of membrane IEP Enrichment
CC GO:0031090 organelle membrane IEP Enrichment
CC GO:0031966 mitochondrial membrane IEP Enrichment
CC GO:0031968 organelle outer membrane IEP Enrichment
MF GO:0032561 guanyl ribonucleotide binding IEP Enrichment
BP GO:0042364 water-soluble vitamin biosynthetic process IEP Enrichment
BP GO:0042548 regulation of photosynthesis, light reaction IEP Enrichment
BP GO:0042549 photosystem II stabilization IEP Enrichment
BP GO:0042723 thiamine-containing compound metabolic process IEP Enrichment
BP GO:0042724 thiamine-containing compound biosynthetic process IEP Enrichment
BP GO:0043467 regulation of generation of precursor metabolites and energy IEP Enrichment
BP GO:0044272 sulfur compound biosynthetic process IEP Enrichment
BP GO:0072527 pyrimidine-containing compound metabolic process IEP Enrichment
BP GO:0072528 pyrimidine-containing compound biosynthetic process IEP Enrichment
BP GO:0090481 pyrimidine nucleotide-sugar transmembrane transport IEP Enrichment
CC GO:0098588 bounding membrane of organelle IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
BP GO:1901264 carbohydrate derivative transport IEP Enrichment
MF GO:1901505 carbohydrate derivative transmembrane transporter activity IEP Enrichment
CC GO:1990204 oxidoreductase complex IEP Enrichment
InterPro domains Description Start Stop
IPR023573 Ribosomal_L18a//L18Ae/LX 7 129
No external refs found!