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  5. TP04G04110.1

TP04G04110.1


Description : RNA recognition motif domain [Interproscan].


Gene families : OG_01_0003158 (OrthoFinder) Phylogenetic Tree(s): OG0003158_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: TP04G04110.1
Cluster HCCA: Cluster_21

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000893.5 tig00000893_g5348.t1 No description available 0.02 OrthoFinder
Cre16.g685200 30778004 No description available 0.05 OrthoFinder
Cz03g11190.t1 No alias RNA recognition motif domain [Interproscan]. 0.09 OrthoFinder
Dusal.0244s00016.1 33186516 RNA recognition motif domain [Interproscan]. 0.01 OrthoFinder
EOD12070 No alias RNA recognition motif domain [Interproscan]. 0.06 OrthoFinder
OT_04G01770.1 No alias RNA recognition motif domain [Interproscan]. 0.03 OrthoFinder
PTI_10G00250.1 No alias RNA recognition motif domain [Interproscan]. 0.14 OrthoFinder
Sro737_g195080.1 Contig1367.g12567 Multiple RNA-binding domain-containing protein 1 0.12 OrthoFinder
Vocar.0042s0105.1 32892088 RNA recognition motif domain [Interproscan]. 0.03 OrthoFinder
XM_002501431.1 MICPUN_81062, 81062 RNA recognition motif domain [Interproscan]. 0.12 OrthoFinder
XM_003057974.1 MicpuC2_16164, 16164 RNA recognition motif domain [Interproscan]. 0.04 OrthoFinder
lcl|LHPG02000005.1_cds_PRW58148.1_7665 PRW58148 Multiple RNA-binding domain-containing 1 0.07 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8495392.1_1390 KAA8495392 Multiple RNA-binding domain-containing protein 1 0.01 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000154 rRNA modification IEP Enrichment
BP GO:0001510 RNA methylation IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003725 double-stranded RNA binding IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
MF GO:0008168 methyltransferase activity IEP Enrichment
MF GO:0008173 RNA methyltransferase activity IEP Enrichment
MF GO:0008175 tRNA methyltransferase activity IEP Enrichment
MF GO:0008176 tRNA (guanine-N7-)-methyltransferase activity IEP Enrichment
MF GO:0008649 rRNA methyltransferase activity IEP Enrichment
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Enrichment
MF GO:0008897 holo-[acyl-carrier-protein] synthase activity IEP Enrichment
BP GO:0009451 RNA modification IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP Enrichment
MF GO:0016435 rRNA (guanine) methyltransferase activity IEP Enrichment
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Enrichment
BP GO:0031167 rRNA methylation IEP Enrichment
CC GO:0032040 small-subunit processome IEP Enrichment
BP GO:0032259 methylation IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
BP GO:0036265 RNA (guanine-N7)-methylation IEP Enrichment
BP GO:0043414 macromolecule methylation IEP Enrichment
BP GO:0070475 rRNA base methylation IEP Enrichment
BP GO:0070476 rRNA (guanine-N7)-methylation IEP Enrichment
MF GO:0140102 catalytic activity, acting on a rRNA IEP Enrichment
InterPro domains Description Start Stop
IPR000504 RRM_dom 533 595
IPR000504 RRM_dom 766 834
IPR000504 RRM_dom 655 738
IPR000504 RRM_dom 333 402
IPR000504 RRM_dom 17 75
No external refs found!