TP04G01090.1


Description : Pentatricopeptide repeat [Interproscan].


Gene families : OG_01_0012487 (OrthoFinder) Phylogenetic Tree(s): OG0012487_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: TP04G01090.1
Cluster HCCA: Cluster_26

Target Alias Description ECC score Gene Family Method Actions
PTI_31G00380.1 No alias Pentatricopeptide repeat [Interproscan]. 0.06 OrthoFinder
Sro160_g072280.1 Contig2985.g23724 Pentatricopeptide repeat-containing protein 0.03 OrthoFinder
Sro160_g072280.2 No alias Pentatricopeptide repeat [Interproscan]. 0.03 OrthoFinder
Sro160_g072280.3 No alias Hypothetical protein 0.04 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
BP GO:0006612 protein targeting to membrane IEP Enrichment
BP GO:0006613 cotranslational protein targeting to membrane IEP Enrichment
BP GO:0006614 SRP-dependent cotranslational protein targeting to membrane IEP Enrichment
BP GO:0006629 lipid metabolic process IEP Enrichment
BP GO:0006721 terpenoid metabolic process IEP Enrichment
BP GO:0008610 lipid biosynthetic process IEP Enrichment
MF GO:0008661 1-deoxy-D-xylulose-5-phosphate synthase activity IEP Enrichment
MF GO:0015399 primary active transmembrane transporter activity IEP Enrichment
CC GO:0016021 integral component of membrane IEP Enrichment
BP GO:0016114 terpenoid biosynthetic process IEP Enrichment
MF GO:0016491 oxidoreductase activity IEP Enrichment
MF GO:0016744 transketolase or transaldolase activity IEP Enrichment
MF GO:0016887 ATPase IEP Enrichment
MF GO:0022804 active transmembrane transporter activity IEP Enrichment
CC GO:0031224 intrinsic component of membrane IEP Enrichment
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEP Enrichment
BP GO:0055114 obsolete oxidation-reduction process IEP Enrichment
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 542 599
No external refs found!