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Description : Pentatricopeptide repeat [Interproscan].
Gene families : OG_01_0012487 (OrthoFinder) Phylogenetic Tree(s): OG0012487_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: TP04G01090.1 | |
| Cluster | HCCA: Cluster_26 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| PTI_31G00380.1 | No alias | Pentatricopeptide repeat [Interproscan]. | 0.06 | OrthoFinder | |
| Sro160_g072280.1 | Contig2985.g23724 | Pentatricopeptide repeat-containing protein | 0.03 | OrthoFinder | |
| Sro160_g072280.2 | No alias | Pentatricopeptide repeat [Interproscan]. | 0.03 | OrthoFinder | |
| Sro160_g072280.3 | No alias | Hypothetical protein | 0.04 | OrthoFinder |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0006612 | protein targeting to membrane | IEP | Enrichment |
| BP | GO:0006613 | cotranslational protein targeting to membrane | IEP | Enrichment |
| BP | GO:0006614 | SRP-dependent cotranslational protein targeting to membrane | IEP | Enrichment |
| BP | GO:0006629 | lipid metabolic process | IEP | Enrichment |
| BP | GO:0006721 | terpenoid metabolic process | IEP | Enrichment |
| BP | GO:0008610 | lipid biosynthetic process | IEP | Enrichment |
| MF | GO:0008661 | 1-deoxy-D-xylulose-5-phosphate synthase activity | IEP | Enrichment |
| MF | GO:0015399 | primary active transmembrane transporter activity | IEP | Enrichment |
| CC | GO:0016021 | integral component of membrane | IEP | Enrichment |
| BP | GO:0016114 | terpenoid biosynthetic process | IEP | Enrichment |
| MF | GO:0016491 | oxidoreductase activity | IEP | Enrichment |
| MF | GO:0016744 | transketolase or transaldolase activity | IEP | Enrichment |
| MF | GO:0016887 | ATPase | IEP | Enrichment |
| MF | GO:0022804 | active transmembrane transporter activity | IEP | Enrichment |
| CC | GO:0031224 | intrinsic component of membrane | IEP | Enrichment |
| MF | GO:0042626 | ATPase-coupled transmembrane transporter activity | IEP | Enrichment |
| BP | GO:0055114 | obsolete oxidation-reduction process | IEP | Enrichment |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR002885 | Pentatricopeptide_repeat | 542 | 599 |
| No external refs found! |