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  5. TP04G00710.1

TP04G00710.1


Description : Coatomer, WD associated region; WD40 repeat [Interproscan].


Gene families : OG_01_0001908 (OrthoFinder) Phylogenetic Tree(s): OG0001908_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: TP04G00710.1
Cluster HCCA: Cluster_36

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020903.33 tig00020903_g15100.t1 Vesicle trafficking.Coat protein I (COPI) coatomer... 0.05 OrthoFinder
Cre02.g118500 30785510, COPB2 Vesicle trafficking.Coat protein I (COPI) coatomer... 0.05 OrthoFinder
Dusal.0118s00002.1 33199925 WD40 repeat; Coatomer, WD associated region [Interproscan]. 0.04 OrthoFinder
OT_01G02470.1 No alias Coatomer, WD associated region; WD40 repeat [Interproscan]. 0.03 OrthoFinder
PTI_09G00050.1 No alias Coatomer, WD associated region; WD40 repeat [Interproscan]. 0.03 OrthoFinder
Sro108_g054340.1 Contig2294.g19014 Coatomer subunit beta 0.1 OrthoFinder
Sro93_g048640.1 Contig3841.g29552 Coatomer subunit beta 0.07 OrthoFinder
SymbC1.scaffold1764.4 1764.4 WD40 repeat; Coatomer, WD associated region [Interproscan]. 0.02 OrthoFinder
Transcript_contig_54449 54449 Coatomer, WD associated region; WD40 repeat [Interproscan]. 0.01 OrthoFinder
UNPLg00368.t1 No alias Coatomer, WD associated region; WD40 repeat [Interproscan]. 0.02 OrthoFinder
Vocar.0033s0044.1 32886333 WD40 repeat; Coatomer, WD associated region [Interproscan]. 0.06 OrthoFinder
lcl|BLLF01000946.1_cds_GFH16103.1_10580 HaLaN_12461, GFH16103 Coatomer subunit beta' 0.01 OrthoFinder
lcl|LHPG02000006.1_cds_PRW57584.1_8697 PRW57584 Coatomer subunit beta-1 isoform X1 0.04 OrthoFinder
lcl|VRMN01000008.1_cds_KAA8492792.1_2528 KAA8492792 Coatomer subunit beta'-1 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005198 structural molecule activity IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
BP GO:0006886 intracellular protein transport IEA Interproscan
BP GO:0016192 vesicle-mediated transport IEA Interproscan
CC GO:0030117 membrane coat IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0005643 nuclear pore IEP Enrichment
BP GO:0006405 RNA export from nucleus IEP Enrichment
BP GO:0006406 mRNA export from nucleus IEP Enrichment
BP GO:0006913 nucleocytoplasmic transport IEP Enrichment
BP GO:0015931 nucleobase-containing compound transport IEP Enrichment
CC GO:0016021 integral component of membrane IEP Enrichment
BP GO:0016973 poly(A)+ mRNA export from nucleus IEP Enrichment
CC GO:0030118 clathrin coat IEP Enrichment
CC GO:0030120 vesicle coat IEP Enrichment
CC GO:0030125 clathrin vesicle coat IEP Enrichment
CC GO:0030126 COPI vesicle coat IEP Enrichment
CC GO:0030130 clathrin coat of trans-Golgi network vesicle IEP Enrichment
CC GO:0030132 clathrin coat of coated pit IEP Enrichment
CC GO:0031224 intrinsic component of membrane IEP Enrichment
BP GO:0050657 nucleic acid transport IEP Enrichment
BP GO:0050658 RNA transport IEP Enrichment
BP GO:0051028 mRNA transport IEP Enrichment
BP GO:0051168 nuclear export IEP Enrichment
BP GO:0051169 nuclear transport IEP Enrichment
BP GO:0051236 establishment of RNA localization IEP Enrichment
CC GO:0098797 plasma membrane protein complex IEP Enrichment
CC GO:0110165 cellular anatomical entity IEP Enrichment
InterPro domains Description Start Stop
IPR001680 WD40_repeat 128 164
IPR001680 WD40_repeat 216 252
IPR001680 WD40_repeat 170 207
IPR001680 WD40_repeat 258 293
IPR006692 Coatomer_WD-assoc_reg 374 820
No external refs found!