1. Home
  2. Species
  3. Thalassiosira pseudonana
  4. Sequence
  5. TP03G06220.1

TP03G06220.1


Description : Ribosomal protein S2 [Interproscan].


Gene families : OG_01_0002089 (OrthoFinder) Phylogenetic Tree(s): OG0002089_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: TP03G06220.1
Cluster HCCA: Cluster_24

Target Alias Description ECC score Gene Family Method Actions
Cre10.g432800 30790737, RPSa Protein biosynthesis.cytosolic ribosome.small subunit... 0.1 OrthoFinder
Cz04g36090.t1 No alias Ribosomal protein S2 [Interproscan]. 0.08 OrthoFinder
Dusal.0160s00027.1 33188334 Ribosomal protein S2 [Interproscan]. 0.25 OrthoFinder
EOD15394 No alias 40S ribosomal protein SA, C-terminal domain; Ribosomal... 0.05 OrthoFinder
OT_03G03280.1 No alias 40S ribosomal protein SA, C-terminal domain; Ribosomal... 0.13 OrthoFinder
PTI_12G01500.1 No alias Ribosomal protein S2 [Interproscan]. 0.26 OrthoFinder
Sro120_g058380.1 Contig2411.g19716 40S ribosomal protein SA 0.28 OrthoFinder
SymbC1.scaffold3021.4 3021.4 Ribosomal protein S2 [Interproscan]. 0.03 OrthoFinder
Transcript_contig_79177 79177 Ribosomal protein S2 [Interproscan]. 0.04 OrthoFinder
Vocar.0008s0458.1 32897164 Ribosomal protein S2 [Interproscan]. 0.07 OrthoFinder
XM_003055196.1 MicpuC2_13384, 13384 Ribosomal protein S2 [Interproscan]. 0.11 OrthoFinder
lcl|BLLF01000494.1_cds_GFH12355.1_6832 HaLaN_08023, GFH12355 40S ribosomal protein SA 0.04 OrthoFinder
lcl|LHPG02000015.1_cds_PRW33794.1_3017 PRW33794 40S ribosomal SA-like 0.03 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8499119.1_8072 KAA8499119 40S ribosomal protein SA 0.16 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003883 CTP synthase activity IEP Enrichment
MF GO:0004807 triose-phosphate isomerase activity IEP Enrichment
BP GO:0006220 pyrimidine nucleotide metabolic process IEP Enrichment
BP GO:0006221 pyrimidine nucleotide biosynthetic process IEP Enrichment
MF GO:0008097 5S rRNA binding IEP Enrichment
CC GO:0015934 large ribosomal subunit IEP Enrichment
MF GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor IEP Enrichment
MF GO:0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses IEP Enrichment
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP Enrichment
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP Enrichment
MF GO:0019843 rRNA binding IEP Enrichment
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Enrichment
BP GO:0042254 ribosome biogenesis IEP Enrichment
BP GO:0044085 cellular component biogenesis IEP Enrichment
CC GO:0044391 ribosomal subunit IEP Enrichment
BP GO:0072527 pyrimidine-containing compound metabolic process IEP Enrichment
BP GO:0072528 pyrimidine-containing compound biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR001865 Ribosomal_S2 115 185
No external refs found!