1. Home
  2. Species
  3. Thalassiosira pseudonana
  4. Sequence
  5. TP03G05500.1

TP03G05500.1


Description : Zn-dependent metallo-hydrolase, RNA specificity domain; Beta-Casp domain; Metallo-beta-lactamase; Pre-mRNA 3'-end-processing endonuclease polyadenylation factor C-term [Interproscan].


Gene families : OG_01_0001543 (OrthoFinder) Phylogenetic Tree(s): OG0001543_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: TP03G05500.1
Cluster HCCA: Cluster_72


Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000350 generation of catalytic spliceosome for second transesterification step IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
CC GO:0005667 transcription regulator complex IEP Enrichment
CC GO:0005669 transcription factor TFIID complex IEP Enrichment
BP GO:0006352 DNA-templated transcription, initiation IEP Enrichment
BP GO:0006367 transcription initiation from RNA polymerase II promoter IEP Enrichment
BP GO:0006400 tRNA modification IEP Enrichment
MF GO:0008134 transcription factor binding IEP Enrichment
MF GO:0016763 pentosyltransferase activity IEP Enrichment
MF GO:0017025 TBP-class protein binding IEP Enrichment
BP GO:0022618 ribonucleoprotein complex assembly IEP Enrichment
BP GO:0032324 molybdopterin cofactor biosynthetic process IEP Enrichment
BP GO:0043545 molybdopterin cofactor metabolic process IEP Enrichment
BP GO:0051189 prosthetic group metabolic process IEP Enrichment
BP GO:0071826 ribonucleoprotein complex subunit organization IEP Enrichment
CC GO:0090575 RNA polymerase II transcription regulator complex IEP Enrichment
MF GO:0140296 general transcription initiation factor binding IEP Enrichment
InterPro domains Description Start Stop
IPR001279 Metallo-B-lactamas 22 200
IPR011108 RMMBL 393 441
IPR021718 CPSF73-100_C 492 552
IPR022712 Beta_Casp 254 377
No external refs found!