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  5. TP03G04610.1

TP03G04610.1


Description : Ribosomal protein L22/L17 [Interproscan].


Gene families : OG_01_0003841 (OrthoFinder) Phylogenetic Tree(s): OG0003841_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: TP03G04610.1
Cluster HCCA: Cluster_24

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00001215.8 tig00001215_g7572.t1 Protein biosynthesis.cytosolic ribosome.large subunit... 0.19 OrthoFinder
Cre13.g568900 30784330, RPL17 Protein biosynthesis.cytosolic ribosome.large subunit... 0.41 OrthoFinder
Cz08g22070.t1 No alias Ribosomal protein L22/L17 [Interproscan]. 0.32 OrthoFinder
Dusal.0117s00014.1 33191086 Ribosomal protein L22/L17 [Interproscan]. 0.17 OrthoFinder
EOD18576 No alias Ribosomal protein L22/L17 [Interproscan]. 0.02 OrthoFinder
OT_06G03040.1 No alias Ribosomal protein L22/L17 [Interproscan]. 0.26 OrthoFinder
PTI_15G02710.1 No alias Ribosomal protein L22/L17 [Interproscan]. 0.43 OrthoFinder
Sro490_g153560.1 Contig328.g4376 60S ribosomal protein L17 0.48 OrthoFinder
SymbC1.scaffold1979.3 1979.3 Ribosomal protein L22/L17 [Interproscan]. 0.06 OrthoFinder
Vocar.0001s0273.1 32884978 Ribosomal protein L22/L17 [Interproscan]. 0.07 OrthoFinder
XM_002499746.1 MICPUN_93345, 93345 Ribosomal protein L22/L17 [Interproscan]. 0.14 OrthoFinder
XM_003062075.1 MicpuC2_49699, 49699 Ribosomal protein L22/L17 [Interproscan]. 0.16 OrthoFinder
lcl|BLLF01000229.1_cds_GFH09375.1_3852 HaLaN_04499, GFH09375 Component of cytosolic 80S ribosome and 60S large subunit 0.02 OrthoFinder
lcl|LHPG02000008.1_cds_PRW56515.1_9742 PRW56515 60S ribosomal L17-2 0.06 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8499482.1_8435 KAA8499482 60S ribosomal protein L17 0.18 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003746 translation elongation factor activity IEP Enrichment
CC GO:0005741 mitochondrial outer membrane IEP Enrichment
BP GO:0006417 regulation of translation IEP Enrichment
BP GO:0006448 regulation of translational elongation IEP Enrichment
BP GO:0006449 regulation of translational termination IEP Enrichment
MF GO:0008097 5S rRNA binding IEP Enrichment
BP GO:0009891 positive regulation of biosynthetic process IEP Enrichment
BP GO:0009893 positive regulation of metabolic process IEP Enrichment
BP GO:0010557 positive regulation of macromolecule biosynthetic process IEP Enrichment
BP GO:0010604 positive regulation of macromolecule metabolic process IEP Enrichment
BP GO:0010608 posttranscriptional regulation of gene expression IEP Enrichment
BP GO:0010628 positive regulation of gene expression IEP Enrichment
CC GO:0015934 large ribosomal subunit IEP Enrichment
MF GO:0019843 rRNA binding IEP Enrichment
CC GO:0019867 outer membrane IEP Enrichment
BP GO:0031325 positive regulation of cellular metabolic process IEP Enrichment
BP GO:0031328 positive regulation of cellular biosynthetic process IEP Enrichment
CC GO:0031966 mitochondrial membrane IEP Enrichment
CC GO:0031968 organelle outer membrane IEP Enrichment
BP GO:0032268 regulation of cellular protein metabolic process IEP Enrichment
BP GO:0032270 positive regulation of cellular protein metabolic process IEP Enrichment
BP GO:0034248 regulation of cellular amide metabolic process IEP Enrichment
BP GO:0034250 positive regulation of cellular amide metabolic process IEP Enrichment
MF GO:0043021 ribonucleoprotein complex binding IEP Enrichment
MF GO:0043022 ribosome binding IEP Enrichment
BP GO:0043243 positive regulation of protein-containing complex disassembly IEP Enrichment
BP GO:0043244 regulation of protein-containing complex disassembly IEP Enrichment
CC GO:0044391 ribosomal subunit IEP Enrichment
MF GO:0044877 protein-containing complex binding IEP Enrichment
BP GO:0045727 positive regulation of translation IEP Enrichment
BP GO:0045901 positive regulation of translational elongation IEP Enrichment
BP GO:0045905 positive regulation of translational termination IEP Enrichment
BP GO:0048518 positive regulation of biological process IEP Enrichment
BP GO:0048522 positive regulation of cellular process IEP Enrichment
BP GO:0051128 regulation of cellular component organization IEP Enrichment
BP GO:0051130 positive regulation of cellular component organization IEP Enrichment
BP GO:0051173 positive regulation of nitrogen compound metabolic process IEP Enrichment
BP GO:0051246 regulation of protein metabolic process IEP Enrichment
BP GO:0051247 positive regulation of protein metabolic process IEP Enrichment
CC GO:0098588 bounding membrane of organelle IEP Enrichment
InterPro domains Description Start Stop
IPR001063 Ribosomal_L22 17 153
No external refs found!