1. Home
  2. Species
  3. Thalassiosira pseudonana
  4. Sequence
  5. TP03G03270.1

TP03G03270.1


Description : Ribosomal protein S19/S15 [Interproscan].


Gene families : OG_01_0001210 (OrthoFinder) Phylogenetic Tree(s): OG0001210_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: TP03G03270.1
Cluster HCCA: Cluster_24

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020830.61 tig00020830_g14444.t1 Protein biosynthesis.cytosolic ribosome.small subunit... 0.26 OrthoFinder
Cre08.g360900 30773772, RPS15 Protein biosynthesis.cytosolic ribosome.small subunit... 0.43 OrthoFinder
Cz15g01190.t1 No alias Ribosomal protein S19/S15 [Interproscan]. 0.17 OrthoFinder
Dusal.0059s00011.1 33203224 Ribosomal protein S19/S15 [Interproscan]. 0.19 OrthoFinder
EOD07298 No alias Ribosomal protein S19/S15 [Interproscan]. 0.02 OrthoFinder
EOD22236 No alias Ribosomal protein S19/S15 [Interproscan]. 0.14 OrthoFinder
OT_12G02670.1 No alias Ribosomal protein S19/S15 [Interproscan]. 0.19 OrthoFinder
PTI_06G03210.1 No alias Ribosomal protein S19/S15 [Interproscan]. 0.39 OrthoFinder
Sro1505_g278180.1 Contig474.g6440 40S ribosomal protein S15 0.39 OrthoFinder
Sro51_chlor_g029510.1 Rps19 Rps19 0.01 OrthoFinder
Sro884_mit_g215570.1 Rps19 Rps19 0.01 OrthoFinder
SymbC1.scaffold5416.2 5416.2 Major facilitator, sugar transporter-like; Ribosomal... 0.05 OrthoFinder
Vocar.0021s0199.1 32896013 Ribosomal protein S19/S15 [Interproscan]. 0.16 OrthoFinder
XM_002507550.1 MICPUN_89585, 89585 Ribosomal protein S19/S15 [Interproscan]. 0.11 OrthoFinder
XM_003054821.1 MicpuC2_30685, 30685 Ribosomal protein S19/S15 [Interproscan]. 0.11 OrthoFinder
lcl|BLLF01002576.1_cds_GFH24586.1_19063 HaLaN_22406, GFH24586 S15 ribosomal protein 0.04 OrthoFinder
lcl|BLLF01005146.1_cds_GFH30784.1_25261 HaLaN_29704, GFH30784 Hypothetical protein 0.01 OrthoFinder
lcl|LHPG02000015.1_cds_PRW33918.1_2873 PRW33918 40S ribosomal S15 0.18 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8500014.1_8967 KAA8500014 40S ribosomal protein S15 0.3 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003697 single-stranded DNA binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
BP GO:0006360 transcription by RNA polymerase I IEP Enrichment
BP GO:0006952 defense response IEP Enrichment
CC GO:0015934 large ribosomal subunit IEP Enrichment
MF GO:0019843 rRNA binding IEP Enrichment
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Enrichment
BP GO:0042254 ribosome biogenesis IEP Enrichment
BP GO:0044085 cellular component biogenesis IEP Enrichment
CC GO:0044391 ribosomal subunit IEP Enrichment
InterPro domains Description Start Stop
IPR002222 Ribosomal_S19 46 131
No external refs found!