1. Home
  2. Species
  3. Thalassiosira pseudonana
  4. Sequence
  5. TP02G08060.1

TP02G08060.1


Description : Chlorophyll A-B binding protein [Interproscan].


Gene families : OG_01_0000059 (OrthoFinder) Phylogenetic Tree(s): OG0000059_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: TP02G08060.1
Cluster HCCA: Cluster_16

Target Alias Description ECC score Gene Family Method Actions
EOD04043 No alias Light harvesting protein [Ensembl]. 0.11 OrthoFinder
EOD04179 No alias Chlorophyll A-B binding protein [Interproscan]. 0.11 OrthoFinder
EOD06381 No alias Light harvesting protein [Ensembl]. 0.1 OrthoFinder
EOD08888 No alias Light harvesting protein [Ensembl]. 0.08 OrthoFinder
EOD09088 No alias Light harvesting protein [Ensembl]. 0.1 OrthoFinder
EOD13767 No alias Light harvesting protein [Ensembl]. 0.12 OrthoFinder
EOD16168 No alias Chlorophyll A-B binding protein [Interproscan]. 0.07 OrthoFinder
EOD17483 No alias Light harvesting protein [Ensembl]. 0.07 OrthoFinder
EOD19212 No alias Chlorophyll A-B binding protein [Interproscan]. 0.05 OrthoFinder
EOD24357 No alias Light harvesting protein [Ensembl]. 0.07 OrthoFinder
EOD28786 No alias Light harvesting protein [Ensembl]. 0.07 OrthoFinder
EOD29856 No alias Light harvesting protein [Ensembl]. 0.04 OrthoFinder
EOD30102 No alias Light harvesting protein [Ensembl]. 0.07 OrthoFinder
EOD31146 No alias Light harvesting protein [Ensembl]. 0.08 OrthoFinder
EOD32547 No alias Light harvesting protein [Ensembl]. 0.07 OrthoFinder
EOD35505 No alias Light harvesting protein [Ensembl]. 0.09 OrthoFinder
EOD38673 No alias Lught harvesting protein [Ensembl]. 0.05 OrthoFinder
EOD41827 No alias Light harvesting protein [Ensembl]. 0.06 OrthoFinder
PTI_02G00650.1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.17 OrthoFinder
PTI_02G00660.1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.06 OrthoFinder
PTI_02G00670.1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.16 OrthoFinder
PTI_02G00680.1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.17 OrthoFinder
PTI_03G05650.1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.16 OrthoFinder
PTI_15G01940.1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.18 OrthoFinder
PTI_15G03790.1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.2 OrthoFinder
PTI_17G01330.1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.18 OrthoFinder
PTI_19G00440.1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.16 OrthoFinder
PTI_20G01250.1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.16 OrthoFinder
PTI_24G01550.1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.17 OrthoFinder
PTI_24G01710.1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.02 OrthoFinder
PTI_24G01720.1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.19 OrthoFinder
PTI_25G01160.1 No alias DnaJ domain; Chlorophyll A-B binding protein [Interproscan]. 0.03 OrthoFinder
Sro1043_g234820.1 Contig3084.g24573 Fucoxanthin-chlorophyll a-c binding protein 0.28 OrthoFinder
Sro125_g060100.1 Contig2833.g22721 Fucoxanthin-chlorophyll a-c binding protein 0.3 OrthoFinder
Sro1292_g260030.1 Contig3668.g28344 Fucoxanthin-chlorophyll a-c binding protein 0.02 OrthoFinder
Sro1292_g260040.1 Contig3668.g28345 Fucoxanthin-chlorophyll a-c binding protein 0.29 OrthoFinder
Sro137_g064500.1 Contig3969.g30465 Fucoxanthin-chlorophyll a-c binding protein 0.32 OrthoFinder
Sro1418_g271000.1 Contig4752.g35216 Fucoxanthin-chlorophyll a-c binding protein 0.3 OrthoFinder
Sro1451_g273830.1 Contig4314.g32534 Fucoxanthin-chlorophyll a-c binding protein 0.29 OrthoFinder
Sro147_g067990.1 Contig246.g3022 Chloroplastic 0.3 OrthoFinder
Sro2004_g310410.1 Contig2826.g22657 Fucoxanthin-chlorophyll a-c binding protein 0.25 OrthoFinder
Sro2330_g323570.1 Contig817.g9103 Fucoxanthin-chlorophyll a-c binding protein 0.26 OrthoFinder
Sro238_g095650.1 Contig99.g1211 Fucoxanthin-chlorophyll a-c binding protein 0.3 OrthoFinder
Sro267_g103520.1 Contig4506.g33814 Fucoxanthin-chlorophyll a-c binding protein 0.28 OrthoFinder
Sro267_g103540.1 Contig4506.g33816 Fucoxanthin-chlorophyll a-c binding protein 0.28 OrthoFinder
Sro2721_g335500.1 Contig3512.g27204 Fucoxanthin-chlorophyll a-c binding protein 0.28 OrthoFinder
Sro31_g020150.1 Contig420.g5610 Fucoxanthin-chlorophyll a-c binding protein A, chloroplastic 0.29 OrthoFinder
Sro326_g118250.1 Contig1080.g10513 Fucoxanthin-chlorophyll a-c binding protein 0.26 OrthoFinder
Sro367_g127810.1 Contig623.g7606 Fucoxanthin-chlorophyll a-c binding protein 0.31 OrthoFinder
Sro376_g129680.1 Contig3640.g28118 Fucoxanthin-chlorophyll a-c binding protein 0.28 OrthoFinder
Sro43_g026030.1 Contig2453.g20069 Fucoxanthin-chlorophyll a-c binding protein 0.29 OrthoFinder
Sro518_g158860.1 Contig3565.g27541 Chloroplastic 0.31 OrthoFinder
Sro533_g161680.1 Contig3819.g29336 Fucoxanthin-chlorophyll a-c binding protein 0.27 OrthoFinder
Sro566_g167740.1 Contig3739.g28669 Fucoxanthin-chlorophyll a-c binding protein 0.29 OrthoFinder
Sro6_g005380.1 Contig175.g2043 Fucoxanthin-chlorophyll a-c binding protein 0.29 OrthoFinder
Sro6_g005400.1 Contig175.g2045 Fucoxanthin-chlorophyll a-c binding protein 0.27 OrthoFinder
Sro720_g192680.1 Contig2421.g19829 Fucoxanthin-chlorophyll a-c binding protein 0.27 OrthoFinder
Sro773_g200470.1 Contig1379.g12690 Fucoxanthin-chlorophyll a-c binding protein 0.25 OrthoFinder
Sro7_g006410.1 Contig389.g5294 Fucoxanthin-chlorophyll a-c binding protein 0.29 OrthoFinder
Sro823_g207590.1 Contig3379.g26446 Fucoxanthin-chlorophyll a-c binding protein 0.31 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0008484 sulfuric ester hydrolase activity IEP Enrichment
MF GO:0008942 nitrite reductase [NAD(P)H] activity IEP Enrichment
CC GO:0009507 chloroplast IEP Enrichment
CC GO:0009536 plastid IEP Enrichment
CC GO:0009654 photosystem II oxygen evolving complex IEP Enrichment
BP GO:0010024 phytochromobilin biosynthetic process IEP Enrichment
BP GO:0010109 regulation of photosynthesis IEP Enrichment
BP GO:0010207 photosystem II assembly IEP Enrichment
MF GO:0010242 oxygen evolving activity IEP Enrichment
MF GO:0016491 oxidoreductase activity IEP Enrichment
MF GO:0016636 oxidoreductase activity, acting on the CH-CH group of donors, iron-sulfur protein as acceptor IEP Enrichment
MF GO:0016661 oxidoreductase activity, acting on other nitrogenous compounds as donors IEP Enrichment
CC GO:0019898 extrinsic component of membrane IEP Enrichment
BP GO:0042548 regulation of photosynthesis, light reaction IEP Enrichment
BP GO:0042549 photosystem II stabilization IEP Enrichment
BP GO:0043467 regulation of generation of precursor metabolites and energy IEP Enrichment
MF GO:0046422 violaxanthin de-epoxidase activity IEP Enrichment
MF GO:0046857 oxidoreductase activity, acting on other nitrogenous compounds as donors, with NAD or NADP as acceptor IEP Enrichment
MF GO:0050897 cobalt ion binding IEP Enrichment
BP GO:0051202 phytochromobilin metabolic process IEP Enrichment
MF GO:0051537 2 iron, 2 sulfur cluster binding IEP Enrichment
BP GO:0055114 obsolete oxidation-reduction process IEP Enrichment
MF GO:0098809 nitrite reductase activity IEP Enrichment
CC GO:1902494 catalytic complex IEP Enrichment
CC GO:1990204 oxidoreductase complex IEP Enrichment
InterPro domains Description Start Stop
IPR022796 Chloroa_b-bind 53 187
No external refs found!