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  5. TP02G01100.1

TP02G01100.1


Description : Strawberry notch, AAA domain; Strawberry notch, helicase C domain [Interproscan].


Gene families : OG_01_0000467 (OrthoFinder) Phylogenetic Tree(s): OG0000467_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: TP02G01100.1
Cluster HCCA: Cluster_7

Target Alias Description ECC score Gene Family Method Actions
Dusal.0166s00009.1 33188727 Strawberry notch, AAA domain [Interproscan]. 0.02 OrthoFinder
Dusal.0695s00005.1 33201554 Strawberry notch, helicase C domain; Strawberry notch,... 0.01 OrthoFinder
Dusal.1045s00001.1 33196253 Strawberry notch, helicase C domain [Interproscan]. 0.02 OrthoFinder
EOD10242 No alias Strawberry notch, AAA domain; Strawberry notch, helicase... 0.03 OrthoFinder
EOD16011 No alias Strawberry notch, helicase C domain [Interproscan]. 0.03 OrthoFinder
EOD16012 No alias Strawberry notch, AAA domain [Interproscan]. 0.02 OrthoFinder
EOD31137 No alias Strawberry notch, AAA domain; Strawberry notch, helicase... 0.02 OrthoFinder
EOD41135 No alias Strawberry notch, AAA domain; Strawberry notch, helicase... 0.02 OrthoFinder
OT_03G05510.1 No alias Strawberry notch, helicase C domain; Strawberry notch,... 0.04 OrthoFinder
Sro106_g053630.1 Contig1122.g10760 Strawberry notch homolog 2 0.03 OrthoFinder
Transcript_contig_55863 55863 Strawberry notch, helicase C domain; Strawberry notch,... 0.01 OrthoFinder
Transcript_contig_78647 78647 Strawberry notch, AAA domain [Interproscan]. 0.01 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Enrichment
MF GO:0004425 indole-3-glycerol-phosphate synthase activity IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
CC GO:0005694 chromosome IEP Enrichment
BP GO:0006270 DNA replication initiation IEP Enrichment
BP GO:0006996 organelle organization IEP Enrichment
MF GO:0016830 carbon-carbon lyase activity IEP Enrichment
MF GO:0016831 carboxy-lyase activity IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
BP GO:0051276 chromosome organization IEP Enrichment
CC GO:0071203 WASH complex IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
InterPro domains Description Start Stop
IPR026937 SBNO_Helicase_C_dom 822 1220
IPR039187 SNO_AAA 83 459
No external refs found!