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  5. TP02G00840.1

TP02G00840.1


Description : Brf1, TBP-binding domain; Transcription factor TFIIB, cyclin-like domain [Interproscan].


Gene families : OG_01_0002221 (OrthoFinder) Phylogenetic Tree(s): OG0002221_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: TP02G00840.1
Cluster HCCA: Cluster_112

Target Alias Description ECC score Gene Family Method Actions
Transcript_contig_55015 55015 Transcription factor TFIIB, cyclin-like domain [Interproscan]. 0.01 OrthoFinder
Vocar.0080s0008.1 32891577 Transcription factor TFIIB, cyclin-like domain; Brf1,... 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0017025 TBP-class protein binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Enrichment
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Enrichment
BP GO:0000398 mRNA splicing, via spliceosome IEP Enrichment
MF GO:0004842 ubiquitin-protein transferase activity IEP Enrichment
CC GO:0005667 transcription regulator complex IEP Enrichment
CC GO:0005669 transcription factor TFIID complex IEP Enrichment
CC GO:0005681 spliceosomal complex IEP Enrichment
BP GO:0006352 DNA-templated transcription, initiation IEP Enrichment
BP GO:0006367 transcription initiation from RNA polymerase II promoter IEP Enrichment
MF GO:0016670 oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor IEP Enrichment
MF GO:0016972 thiol oxidase activity IEP Enrichment
MF GO:0019787 ubiquitin-like protein transferase activity IEP Enrichment
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Enrichment
BP GO:0048193 Golgi vesicle transport IEP Enrichment
CC GO:0090575 RNA polymerase II transcription regulator complex IEP Enrichment
CC GO:0140513 nuclear protein-containing complex IEP Enrichment
InterPro domains Description Start Stop
IPR011665 BRF1_TBP-bd_dom 257 361
IPR013150 TFIIB_cyclin 3 52
No external refs found!