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  5. TP02G00280.1

TP02G00280.1


Description : Ribosomal protein S13 [Interproscan].


Gene families : OG_01_0002223 (OrthoFinder) Phylogenetic Tree(s): OG0002223_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: TP02G00280.1
Cluster HCCA: Cluster_24

Target Alias Description ECC score Gene Family Method Actions
Cre06.g272950 30778811, RPS18 Protein biosynthesis.cytosolic ribosome.small subunit... 0.47 OrthoFinder
Cz03g21050.t1 No alias Ribosomal protein S13 [Interproscan]. 0.12 OrthoFinder
Dusal.0003s00026.1 33187489 Ribosomal protein S13 [Interproscan]. 0.15 OrthoFinder
EOD07550 No alias Ribosomal protein S13 [Interproscan]. 0.27 OrthoFinder
EOD24485 No alias Ribosomal protein S13 [Interproscan]. 0.27 OrthoFinder
OT_14G03080.1 No alias Ribosomal protein S13 [Interproscan]. 0.21 OrthoFinder
PTI_23G01020.1 No alias Ribosomal protein S13 [Interproscan]. 0.47 OrthoFinder
Sro2117_g315240.1 Contig3258.g25694 40S ribosomal protein S18 0.52 OrthoFinder
SymbC1.scaffold24401.1 24401.1 Ribosomal protein S13 [Interproscan]. 0.06 OrthoFinder
SymbC1.scaffold6247.1 6247.1 Ribosomal protein S13 [Interproscan]. 0.01 OrthoFinder
Vocar.0002s0337.1 32891179 Ribosomal protein S13 [Interproscan]. 0.24 OrthoFinder
XM_002505702.1 MICPUN_109369, 109369 Ribosomal protein S18 (RPS18) 0.36 OrthoFinder
XM_003063744.1 MicpuC2_49747, 49747 Ribosomal protein S18 (RPS18) 0.16 OrthoFinder
lcl|BLLF01000380.1_cds_GFH11171.1_5648 HaLaN_06627, GFH11171 Ribosomal protein S18 0.04 OrthoFinder
lcl|LHPG02000008.1_cds_PRW56629.1_9755 PRW56629 40S ribosomal S18 0.26 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8495014.1_3544 KAA8495014 40S ribosomal protein S18 0.19 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003746 translation elongation factor activity IEP Enrichment
BP GO:0006417 regulation of translation IEP Enrichment
BP GO:0006448 regulation of translational elongation IEP Enrichment
BP GO:0006449 regulation of translational termination IEP Enrichment
MF GO:0008097 5S rRNA binding IEP Enrichment
BP GO:0009891 positive regulation of biosynthetic process IEP Enrichment
BP GO:0009893 positive regulation of metabolic process IEP Enrichment
BP GO:0010557 positive regulation of macromolecule biosynthetic process IEP Enrichment
BP GO:0010604 positive regulation of macromolecule metabolic process IEP Enrichment
BP GO:0010608 posttranscriptional regulation of gene expression IEP Enrichment
BP GO:0010628 positive regulation of gene expression IEP Enrichment
CC GO:0015934 large ribosomal subunit IEP Enrichment
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP Enrichment
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP Enrichment
BP GO:0031325 positive regulation of cellular metabolic process IEP Enrichment
BP GO:0031328 positive regulation of cellular biosynthetic process IEP Enrichment
BP GO:0032268 regulation of cellular protein metabolic process IEP Enrichment
BP GO:0032270 positive regulation of cellular protein metabolic process IEP Enrichment
BP GO:0034248 regulation of cellular amide metabolic process IEP Enrichment
BP GO:0034250 positive regulation of cellular amide metabolic process IEP Enrichment
MF GO:0043021 ribonucleoprotein complex binding IEP Enrichment
MF GO:0043022 ribosome binding IEP Enrichment
BP GO:0043243 positive regulation of protein-containing complex disassembly IEP Enrichment
BP GO:0043244 regulation of protein-containing complex disassembly IEP Enrichment
CC GO:0044391 ribosomal subunit IEP Enrichment
MF GO:0044877 protein-containing complex binding IEP Enrichment
BP GO:0045727 positive regulation of translation IEP Enrichment
BP GO:0045901 positive regulation of translational elongation IEP Enrichment
BP GO:0045905 positive regulation of translational termination IEP Enrichment
BP GO:0048518 positive regulation of biological process IEP Enrichment
BP GO:0048522 positive regulation of cellular process IEP Enrichment
BP GO:0051128 regulation of cellular component organization IEP Enrichment
BP GO:0051130 positive regulation of cellular component organization IEP Enrichment
BP GO:0051173 positive regulation of nitrogen compound metabolic process IEP Enrichment
BP GO:0051246 regulation of protein metabolic process IEP Enrichment
BP GO:0051247 positive regulation of protein metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR001892 Ribosomal_S13 16 144
No external refs found!