1. Home
  2. Species
  3. Thalassiosira pseudonana
  4. Sequence
  5. TP01G11520.1

TP01G11520.1


Description : Coproporphyrinogen III oxidase, aerobic [Interproscan].


Gene families : OG_01_0002042 (OrthoFinder) Phylogenetic Tree(s): OG0002042_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: TP01G11520.1
Cluster HCCA: Cluster_26

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000471.12 tig00000471_g1187.t1 Coenzyme metabolism.tetrapyrrol... 0.06 OrthoFinder
Cz18g10090.t1 No alias Coproporphyrinogen III oxidase, aerobic [Interproscan]. 0.07 OrthoFinder
EOD09628 No alias Coproporphyrinogen oxidase [Ensembl]. 0.08 OrthoFinder
OT_03G03200.1 No alias Coproporphyrinogen III oxidase, aerobic [Interproscan]. 0.08 OrthoFinder
PTI_17G02750.1 No alias Coproporphyrinogen III oxidase, aerobic [Interproscan]. 0.19 OrthoFinder
Sro443_g144070.1 Contig715.g8253 Oxygen-dependent coproporphyrinogen-III oxidase 0.24 OrthoFinder
Transcript_contig_54910 54910 Coproporphyrinogen III oxidase, aerobic [Interproscan]. 0.01 OrthoFinder
Vocar.0028s0183.1 32895648 Coproporphyrinogen III oxidase, aerobic [Interproscan]. 0.03 OrthoFinder
XM_002501187.1 MICPUN_104790, 104790 Coproporphyrinogen III oxidase chloroplast precursor (HEMF) 0.11 OrthoFinder
XM_003062268.1 MicpuC2_52031, 52031 Coproporphyrinogen III oxidase chloroplast precursor (HEMF) 0.04 OrthoFinder
lcl|LHPG02000015.1_cds_PRW34019.1_3059 PRW34019 Coproporphyrinogen III oxidase 0.06 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8497825.1_6778 KAA8497825 Oxygen-dependent coproporphyrinogen-III oxidase, chloroplastic 0.03 OrthoFinder
lcl|VRMN01000008.1_cds_KAA8492718.1_2454 KAA8492718 Oxygen-dependent coproporphyrinogen-III oxidase, chloroplastic 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0004109 coproporphyrinogen oxidase activity IEA Interproscan
BP GO:0006779 porphyrin-containing compound biosynthetic process IEA Interproscan
BP GO:0055114 obsolete oxidation-reduction process IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEP Enrichment
MF GO:0004418 hydroxymethylbilane synthase activity IEP Enrichment
MF GO:0004427 inorganic diphosphatase activity IEP Enrichment
MF GO:0004655 porphobilinogen synthase activity IEP Enrichment
MF GO:0004853 uroporphyrinogen decarboxylase activity IEP Enrichment
CC GO:0005737 cytoplasm IEP Enrichment
BP GO:0006720 isoprenoid metabolic process IEP Enrichment
BP GO:0006721 terpenoid metabolic process IEP Enrichment
BP GO:0008299 isoprenoid biosynthetic process IEP Enrichment
MF GO:0008483 transaminase activity IEP Enrichment
BP GO:0008610 lipid biosynthetic process IEP Enrichment
MF GO:0008883 glutamyl-tRNA reductase activity IEP Enrichment
BP GO:0016114 terpenoid biosynthetic process IEP Enrichment
MF GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor IEP Enrichment
MF GO:0016725 oxidoreductase activity, acting on CH or CH2 groups IEP Enrichment
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP Enrichment
MF GO:0016769 transferase activity, transferring nitrogenous groups IEP Enrichment
MF GO:0016829 lyase activity IEP Enrichment
MF GO:0016830 carbon-carbon lyase activity IEP Enrichment
MF GO:0016831 carboxy-lyase activity IEP Enrichment
MF GO:0016851 magnesium chelatase activity IEP Enrichment
MF GO:0016853 isomerase activity IEP Enrichment
MF GO:0016854 racemase and epimerase activity IEP Enrichment
MF GO:0016857 racemase and epimerase activity, acting on carbohydrates and derivatives IEP Enrichment
MF GO:0016872 intramolecular lyase activity IEP Enrichment
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP Enrichment
MF GO:0032977 membrane insertase activity IEP Enrichment
MF GO:0043169 cation binding IEP Enrichment
BP GO:0044255 cellular lipid metabolic process IEP Enrichment
MF GO:0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity IEP Enrichment
MF GO:0046872 metal ion binding IEP Enrichment
MF GO:0050660 flavin adenine dinucleotide binding IEP Enrichment
MF GO:0051002 ligase activity, forming nitrogen-metal bonds IEP Enrichment
MF GO:0051003 ligase activity, forming nitrogen-metal bonds, forming coordination complexes IEP Enrichment
MF GO:0052592 oxidoreductase activity, acting on CH or CH2 groups, with an iron-sulfur protein as acceptor IEP Enrichment
MF GO:0071949 FAD binding IEP Enrichment
MF GO:0140597 protein carrier activity IEP Enrichment
InterPro domains Description Start Stop
IPR001260 Coprogen_oxidase_aer 2 297
No external refs found!