- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
Description : Chlorophyll A-B binding protein [Interproscan].
Gene families : OG_01_0000076 (OrthoFinder) Phylogenetic Tree(s): OG0000076_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: TP01G11130.1 | |
| Cluster | HCCA: Cluster_26 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Cre08.g365900 | 30773702, LHCSR1 | Photosynthesis.photophosphorylation.photosystem... | 0.02 | OrthoFinder | |
| Cre08.g367400 | 30773729, LHCSR3 | Photosynthesis.photophosphorylation.photosystem... | 0.02 | OrthoFinder | |
| Cre08.g367500 | 30774166, LHCSR2 | Photosynthesis.photophosphorylation.photosystem... | 0.02 | OrthoFinder | |
| Cz16g02040.t1 | No alias | Chlorophyll A-B binding protein [Interproscan]. | 0.04 | OrthoFinder | |
| EOD06468 | No alias | Light harvesting protein [Ensembl]. | 0.03 | OrthoFinder | |
| EOD09836 | No alias | Light harvesting protein [Ensembl]. | 0.03 | OrthoFinder | |
| EOD20807 | No alias | Chlorophyll A-B binding protein [Interproscan]. | 0.02 | OrthoFinder | |
| EOD25053 | No alias | Light-harvesting family [Ensembl]. | 0.07 | OrthoFinder | |
| PTI_01G10030.1 | No alias | Chlorophyll A-B binding protein [Interproscan]. | 0.06 | OrthoFinder | |
| PTI_02G03310.1 | No alias | Chlorophyll A-B binding protein [Interproscan]. | 0.03 | OrthoFinder | |
| PTI_02G04020.1 | No alias | Chlorophyll A-B binding protein [Interproscan]. | 0.02 | OrthoFinder | |
| PTI_04G04620.1 | No alias | Chlorophyll A-B binding protein [Interproscan]. | 0.03 | OrthoFinder | |
| PTI_05G00320.1 | No alias | Chlorophyll A-B binding protein [Interproscan]. | 0.07 | OrthoFinder | |
| PTI_07G04400.1 | No alias | Chlorophyll A-B binding protein [Interproscan]. | 0.05 | OrthoFinder | |
| PTI_14G03460.1 | No alias | Chlorophyll A-B binding protein [Interproscan]. | 0.07 | OrthoFinder | |
| PTI_15G00600.1 | No alias | Chlorophyll A-B binding protein [Interproscan]. | 0.03 | OrthoFinder | |
| Sro122_g059170.1 | Contig71.g736 | Chloroplastic | 0.04 | OrthoFinder | |
| Sro1430_g271970.1 | Contig4579.g34184 | B binding protein L1818, chloroplastic | 0.02 | OrthoFinder | |
| Sro149_g068330.1 | Contig259.g3201 | Chloroplastic | 0.05 | OrthoFinder | |
| Sro149_g068340.1 | Contig259.g3202 | B binding protein L1818, chloroplastic | 0.03 | OrthoFinder | |
| Sro234_g094380.1 | Contig3223.g25485 | Fucoxanthin-chlorophyll a-c binding protein | 0.01 | OrthoFinder | |
| Sro2423_g327210.1 | Contig3569.g27581 | Chloroplastic | 0.02 | OrthoFinder | |
| Sro74_g040880.1 | Contig4700.g34950 | I chlorophyll a/b-binding protein | 0.04 | OrthoFinder | |
| SymbC1.scaffold5079.2 | 5079.2 | Chlorophyll A-B binding protein [Interproscan]. | 0.02 | OrthoFinder | |
| XM_002506509.1 | MICPUN_105009, 105009 | Chlorophyll a/b-binding protein (LI818R) | 0.02 | OrthoFinder | |
| lcl|BLLF01001602.1_cds_GFH20248.1_14725 | HaLaN_17338, GFH20248 | Chlorophyll a-b binding protein, chloroplastic | 0.02 | OrthoFinder | |
| lcl|VRMN01000001.1_cds_KAA8498066.1_7019 | KAA8498066 | Chlorophyll a-b binding protein of LHCII type III, chloroplastic | 0.02 | OrthoFinder |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003824 | catalytic activity | IEP | Enrichment |
| MF | GO:0003989 | acetyl-CoA carboxylase activity | IEP | Enrichment |
| MF | GO:0004807 | triose-phosphate isomerase activity | IEP | Enrichment |
| MF | GO:0005261 | cation channel activity | IEP | Enrichment |
| BP | GO:0006629 | lipid metabolic process | IEP | Enrichment |
| BP | GO:0006633 | fatty acid biosynthetic process | IEP | Enrichment |
| BP | GO:0006721 | terpenoid metabolic process | IEP | Enrichment |
| BP | GO:0006811 | ion transport | IEP | Enrichment |
| BP | GO:0006812 | cation transport | IEP | Enrichment |
| MF | GO:0008324 | cation transmembrane transporter activity | IEP | Enrichment |
| BP | GO:0008610 | lipid biosynthetic process | IEP | Enrichment |
| MF | GO:0008661 | 1-deoxy-D-xylulose-5-phosphate synthase activity | IEP | Enrichment |
| MF | GO:0015075 | ion transmembrane transporter activity | IEP | Enrichment |
| MF | GO:0015095 | magnesium ion transmembrane transporter activity | IEP | Enrichment |
| MF | GO:0015252 | proton channel activity | IEP | Enrichment |
| BP | GO:0015693 | magnesium ion transport | IEP | Enrichment |
| CC | GO:0016021 | integral component of membrane | IEP | Enrichment |
| BP | GO:0016114 | terpenoid biosynthetic process | IEP | Enrichment |
| MF | GO:0016421 | CoA carboxylase activity | IEP | Enrichment |
| MF | GO:0016491 | oxidoreductase activity | IEP | Enrichment |
| MF | GO:0016624 | oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor | IEP | Enrichment |
| MF | GO:0016744 | transketolase or transaldolase activity | IEP | Enrichment |
| MF | GO:0016832 | aldehyde-lyase activity | IEP | Enrichment |
| MF | GO:0016872 | intramolecular lyase activity | IEP | Enrichment |
| MF | GO:0016885 | ligase activity, forming carbon-carbon bonds | IEP | Enrichment |
| CC | GO:0031224 | intrinsic component of membrane | IEP | Enrichment |
| CC | GO:0033178 | proton-transporting two-sector ATPase complex, catalytic domain | IEP | Enrichment |
| BP | GO:0044255 | cellular lipid metabolic process | IEP | Enrichment |
| CC | GO:0045261 | proton-transporting ATP synthase complex, catalytic core F(1) | IEP | Enrichment |
| MF | GO:0046933 | proton-transporting ATP synthase activity, rotational mechanism | IEP | Enrichment |
| BP | GO:0055114 | obsolete oxidation-reduction process | IEP | Enrichment |
| BP | GO:0072330 | monocarboxylic acid biosynthetic process | IEP | Enrichment |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR022796 | Chloroa_b-bind | 45 | 209 |
| No external refs found! |