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  5. TP01G09850.1

TP01G09850.1


Description : RNA recognition motif domain [Interproscan].


Gene families : OG_01_0002817 (OrthoFinder) Phylogenetic Tree(s): OG0002817_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: TP01G09850.1
Cluster HCCA: Cluster_36

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000076.87 tig00000076_g2385.t1 U2 small nuclear ribonucleoprotein B OS=Oryza sativa... 0.02 OrthoFinder
Cre13.g566700 30784051 RNA processing.RNA splicing.U2-type-intron-specific... 0.03 OrthoFinder
Cz11g28070.t1 No alias RNA recognition motif domain [Interproscan]. 0.02 OrthoFinder
Dusal.0383s00015.1 33199470 RNA recognition motif domain [Interproscan]. 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003684 damaged DNA binding IEP Enrichment
BP GO:0006281 DNA repair IEP Enrichment
BP GO:0006289 nucleotide-excision repair IEP Enrichment
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP Enrichment
BP GO:0009057 macromolecule catabolic process IEP Enrichment
BP GO:0010498 proteasomal protein catabolic process IEP Enrichment
BP GO:0019941 modification-dependent protein catabolic process IEP Enrichment
BP GO:0030163 protein catabolic process IEP Enrichment
BP GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process IEP Enrichment
BP GO:0043632 modification-dependent macromolecule catabolic process IEP Enrichment
BP GO:0044265 cellular macromolecule catabolic process IEP Enrichment
BP GO:1901565 organonitrogen compound catabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR000504 RRM_dom 44 105
IPR000504 RRM_dom 200 254
No external refs found!