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  5. TP01G07090.1

TP01G07090.1


Description : GAF domain; 3'5'-cyclic nucleotide phosphodiesterase, catalytic domain [Interproscan].


Gene families : OG_01_0000012 (OrthoFinder) Phylogenetic Tree(s): OG0000012_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: TP01G07090.1
Cluster HCCA: Cluster_107

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000361.56 tig00000361_g24404.t1 No description available 0.01 OrthoFinder
Cpa|evm.model.tig00000691.12 tig00000691_g3162.t1 No description available 0.03 OrthoFinder
Cpa|evm.model.tig00000984.21 tig00000984_g5996.t1 No description available 0.02 OrthoFinder
Cpa|evm.model.tig00001187.22 tig00001187_g7471.t1 No description available 0.01 OrthoFinder
Cpa|evm.model.tig00020616.44 tig00020616_g12280.t1 No description available 0.02 OrthoFinder
Cpa|evm.model.tig00020904.36 tig00020904_g15169.t1 No description available 0.02 OrthoFinder
Cre02.g143400 30785899 No description available 0.02 OrthoFinder
Dusal.0374s00002.1 33192013 Heme NO-binding; 3'5'-cyclic nucleotide... 0.01 OrthoFinder
Sro857_g211710.1 Contig1150.g11009 Affinity cAMP-specific and IBMX-insensitive 3',5'-cyclic... 0.03 OrthoFinder
SymbC1.scaffold5730.2 5730.2 3'5'-cyclic nucleotide phosphodiesterase, catalytic... 0.01 OrthoFinder
SymbC1.scaffold614.6 614.6 3'5'-cyclic nucleotide phosphodiesterase, catalytic... 0.02 OrthoFinder
SymbC1.scaffold98.9 98.9 3'5'-cyclic nucleotide phosphodiesterase, catalytic... 0.01 OrthoFinder
Vocar.0006s0430.1 32893871 3'5'-cyclic nucleotide phosphodiesterase, catalytic... 0.02 OrthoFinder
Vocar.0008s0033.1 32897124 3'5'-cyclic nucleotide phosphodiesterase, catalytic... 0.01 OrthoFinder
lcl|BLLF01000175.1_cds_GFH08655.1_3132 HaLaN_03648, GFH08655 3'5'-cyclic nucleotide phosphodiesterase 0.02 OrthoFinder
lcl|BLLF01000243.1_cds_GFH09543.1_4020 HaLaN_04710, GFH09543 3'5'-cyclic nucleotide phosphodiesterase 0.02 OrthoFinder
lcl|BLLF01001240.1_cds_GFH18038.1_12515 HaLaN_14774, GFH18038 Phosphodiesterase 0.03 OrthoFinder
lcl|BLLF01004767.1_cds_GFH30211.1_24688 HaLaN_29017, GFH30211 Phosphodiesterase 0.01 OrthoFinder
lcl|BLLF01005160.1_cds_GFH30817.1_25294 HaLaN_29739, GFH30817 Phosphodiesterase 0.01 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0004114 3',5'-cyclic-nucleotide phosphodiesterase activity IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
BP GO:0007165 signal transduction IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Enrichment
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Enrichment
BP GO:0000398 mRNA splicing, via spliceosome IEP Enrichment
MF GO:0005216 ion channel activity IEP Enrichment
BP GO:0006298 mismatch repair IEP Enrichment
BP GO:0006397 mRNA processing IEP Enrichment
BP GO:0008380 RNA splicing IEP Enrichment
MF GO:0015267 channel activity IEP Enrichment
BP GO:0016071 mRNA metabolic process IEP Enrichment
MF GO:0017069 snRNA binding IEP Enrichment
MF GO:0017070 U6 snRNA binding IEP Enrichment
MF GO:0022803 passive transmembrane transporter activity IEP Enrichment
MF GO:0030623 U5 snRNA binding IEP Enrichment
MF GO:0043169 cation binding IEP Enrichment
MF GO:0046872 metal ion binding IEP Enrichment
CC GO:0071203 WASH complex IEP Enrichment
InterPro domains Description Start Stop
IPR002073 PDEase_catalytic_dom 307 529
IPR003018 GAF 32 169
No external refs found!