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  5. TP01G06540.1

TP01G06540.1


Description : Domain of unknown function DUF1605; S1 domain; Helicase, C-terminal; Helicase-associated domain [Interproscan].


Gene families : OG_01_0000042 (OrthoFinder) Phylogenetic Tree(s): OG0000042_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: TP01G06540.1
Cluster HCCA: Cluster_42

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000473.1 tig00000473_g1200.t1 Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.02 OrthoFinder
Cpa|evm.model.tig00020531.53 tig00020531_g10059.t1 Pre-mRNA-splicing factor ATP-dependent RNA helicase... 0.02 OrthoFinder
Cre07.g349100 30774605 RNA processing.RNA splicing.spliceosome... 0.02 OrthoFinder
Cre08.g358563 30773457 Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.02 OrthoFinder
Cz02g22140.t1 No alias Helicase, C-terminal; Domain of unknown function... 0.01 OrthoFinder
Cz14g08150.t1 No alias Helicase, C-terminal; Domain of unknown function... 0.02 OrthoFinder
OT_04G02170.1 No alias S1 domain; AAA+ ATPase domain; Helicase, C-terminal;... 0.02 OrthoFinder
PTI_07G01260.1 No alias Helicase, C-terminal; Helicase-associated domain; Domain... 0.03 OrthoFinder
PTI_11G03860.1 No alias Helicase, C-terminal; Helicase-associated domain; Domain... 0.03 OrthoFinder
Sro1496_g277510.1 Contig2419.g19801 Splicing factor ATP-dependent RNA helicase 0.02 OrthoFinder
Sro657_g182550.1 Contig301.g3975 Splicing factor ATP-dependent RNA helicase-like protein cdc28 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0004386 helicase activity IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP Enrichment
MF GO:0004540 ribonuclease activity IEP Enrichment
BP GO:0006887 exocytosis IEP Enrichment
BP GO:0016192 vesicle-mediated transport IEP Enrichment
BP GO:0032940 secretion by cell IEP Enrichment
MF GO:0043531 ADP binding IEP Enrichment
BP GO:0046903 secretion IEP Enrichment
CC GO:0099023 vesicle tethering complex IEP Enrichment
BP GO:0140352 export from cell IEP Enrichment
InterPro domains Description Start Stop
IPR007502 Helicase-assoc_dom 930 1018
IPR001650 Helicase_C 737 868
IPR011709 DUF1605 1077 1152
IPR003029 S1_domain 228 292
No external refs found!