1. Home
  2. Species
  3. Thalassiosira pseudonana
  4. Sequence
  5. TP01G05450.1

TP01G05450.1


Description : SANT/Myb domain; Zinc finger, ZZ-type [Interproscan].


Gene families : OG_01_0002181 (OrthoFinder) Phylogenetic Tree(s): OG0002181_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: TP01G05450.1
Cluster HCCA: Cluster_107

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000217.35 tig00000042_g15509.t1 Transcriptional adapter ADA2 OS=Oryza sativa subsp. japonica 0.02 OrthoFinder
Vocar.0026s0075.1 32892520 Zinc finger, ZZ-type; SANT/Myb domain [Interproscan]. 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003690 double-stranded DNA binding IEP Enrichment
MF GO:0004175 endopeptidase activity IEP Enrichment
BP GO:0006298 mismatch repair IEP Enrichment
BP GO:0007155 cell adhesion IEP Enrichment
MF GO:0008017 microtubule binding IEP Enrichment
MF GO:0015276 ligand-gated ion channel activity IEP Enrichment
CC GO:0016020 membrane IEP Enrichment
MF GO:0016787 hydrolase activity IEP Enrichment
BP GO:0022610 biological adhesion IEP Enrichment
MF GO:0022834 ligand-gated channel activity IEP Enrichment
MF GO:0022836 gated channel activity IEP Enrichment
MF GO:0030983 mismatched DNA binding IEP Enrichment
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR000433 Znf_ZZ 2 38
IPR001005 SANT/Myb 51 80
No external refs found!