1. Home
  2. Species
  3. Thalassiosira pseudonana
  4. Sequence
  5. TP01G02590.1

TP01G02590.1


Description : CobN/magnesium chelatase; Magnesium chelatase, subunit H, N-terminal [Interproscan].


Gene families : OG_01_0000669 (OrthoFinder) Phylogenetic Tree(s): OG0000669_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: TP01G02590.1
Cluster HCCA: Cluster_80

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000383.32 tig00000383_g24642.t1 Magnesium-chelatase subunit ChlH, chloroplastic OS=Oryza... 0.01 OrthoFinder
Cre07.g325500 30775304 Phytohormones.abscisic acid.perception and... 0.1 OrthoFinder
Cz14g15070.t1 No alias Magnesium chelatase, subunit H, N-terminal;... 0.02 OrthoFinder
Dusal.0924s00003.1 33203268 Magnesium chelatase, subunit H, N-terminal;... 0.02 OrthoFinder
EOD35305 No alias Magnesium chelatase H subunit [Ensembl]. 0.06 OrthoFinder
EOD40958 No alias Magnesium chelatase H subunit [Ensembl]. 0.04 OrthoFinder
OT_04G02110.1 No alias Magnesium chelatase, subunit H, N-terminal;... 0.08 OrthoFinder
PTI_11G00790.1 No alias CobN/magnesium chelatase; Magnesium chelatase, subunit... 0.22 OrthoFinder
Sro414_g138250.1 Contig453.g6100 Chelatase subunit ChlH, chloroplastic 0.18 OrthoFinder
SymbC1.scaffold25.158 25.158 Cobalamin (vitamin B12) biosynthesis CobW-like,... 0.01 OrthoFinder
SymbC1.scaffold744.4 744.4 CobN/magnesium chelatase [Interproscan]. 0.02 OrthoFinder
Transcript_contig_89263 89263 Magnesium chelatase, subunit H, N-terminal;... 0.02 OrthoFinder
Vocar.0003s0179.1 32889379 Magnesium chelatase, subunit H, N-terminal;... 0.02 OrthoFinder
lcl|BLLF01000208.1_cds_GFH09094.1_3571 HaLaN_04176, GFH09094 Magnesium chelatase subunit H 0.05 OrthoFinder
lcl|LHPG02000006.1_cds_PRW57649.1_8291 PRW57649 Magnesium chelatase subunit H 0.08 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8495996.1_1994 KAA8495996 Magnesium-chelatase subunit ChlH, chloroplastic 0.04 OrthoFinder

Type GO Term Name Evidence Source
BP GO:0009058 biosynthetic process IEA Interproscan
MF GO:0016851 magnesium chelatase activity IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004109 coproporphyrinogen oxidase activity IEP Enrichment
MF GO:0004418 hydroxymethylbilane synthase activity IEP Enrichment
MF GO:0004427 inorganic diphosphatase activity IEP Enrichment
MF GO:0004655 porphobilinogen synthase activity IEP Enrichment
MF GO:0004853 uroporphyrinogen decarboxylase activity IEP Enrichment
MF GO:0005261 cation channel activity IEP Enrichment
BP GO:0006081 cellular aldehyde metabolic process IEP Enrichment
BP GO:0006629 lipid metabolic process IEP Enrichment
BP GO:0006643 membrane lipid metabolic process IEP Enrichment
BP GO:0006664 glycolipid metabolic process IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0006778 porphyrin-containing compound metabolic process IEP Enrichment
BP GO:0006779 porphyrin-containing compound biosynthetic process IEP Enrichment
MF GO:0008483 transaminase activity IEP Enrichment
BP GO:0008610 lipid biosynthetic process IEP Enrichment
MF GO:0008883 glutamyl-tRNA reductase activity IEP Enrichment
BP GO:0009240 isopentenyl diphosphate biosynthetic process IEP Enrichment
BP GO:0009247 glycolipid biosynthetic process IEP Enrichment
BP GO:0009767 photosynthetic electron transport chain IEP Enrichment
MF GO:0015252 proton channel activity IEP Enrichment
MF GO:0016168 chlorophyll binding IEP Enrichment
MF GO:0016491 oxidoreductase activity IEP Enrichment
MF GO:0016634 oxidoreductase activity, acting on the CH-CH group of donors, oxygen as acceptor IEP Enrichment
MF GO:0016725 oxidoreductase activity, acting on CH or CH2 groups IEP Enrichment
MF GO:0016726 oxidoreductase activity, acting on CH or CH2 groups, NAD or NADP as acceptor IEP Enrichment
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP Enrichment
MF GO:0016769 transferase activity, transferring nitrogenous groups IEP Enrichment
MF GO:0016829 lyase activity IEP Enrichment
MF GO:0016830 carbon-carbon lyase activity IEP Enrichment
MF GO:0016831 carboxy-lyase activity IEP Enrichment
MF GO:0016872 intramolecular lyase activity IEP Enrichment
BP GO:0018130 heterocycle biosynthetic process IEP Enrichment
BP GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway IEP Enrichment
BP GO:0019438 aromatic compound biosynthetic process IEP Enrichment
BP GO:0019682 glyceraldehyde-3-phosphate metabolic process IEP Enrichment
BP GO:0019684 photosynthesis, light reaction IEP Enrichment
MF GO:0032977 membrane insertase activity IEP Enrichment
BP GO:0033013 tetrapyrrole metabolic process IEP Enrichment
BP GO:0033014 tetrapyrrole biosynthetic process IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
MF GO:0043169 cation binding IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044249 cellular biosynthetic process IEP Enrichment
BP GO:0044255 cellular lipid metabolic process IEP Enrichment
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Enrichment
BP GO:0046467 membrane lipid biosynthetic process IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
BP GO:0046490 isopentenyl diphosphate metabolic process IEP Enrichment
MF GO:0046872 metal ion binding IEP Enrichment
MF GO:0046933 proton-transporting ATP synthase activity, rotational mechanism IEP Enrichment
MF GO:0050660 flavin adenine dinucleotide binding IEP Enrichment
BP GO:0050992 dimethylallyl diphosphate biosynthetic process IEP Enrichment
BP GO:0050993 dimethylallyl diphosphate metabolic process IEP Enrichment
MF GO:0051745 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity IEP Enrichment
BP GO:0055114 obsolete oxidation-reduction process IEP Enrichment
MF GO:0071949 FAD binding IEP Enrichment
MF GO:0140101 catalytic activity, acting on a tRNA IEP Enrichment
MF GO:0140104 molecular carrier activity IEP Enrichment
MF GO:0140597 protein carrier activity IEP Enrichment
BP GO:1901135 carbohydrate derivative metabolic process IEP Enrichment
BP GO:1901137 carbohydrate derivative biosynthetic process IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
BP GO:1901362 organic cyclic compound biosynthetic process IEP Enrichment
BP GO:1901564 organonitrogen compound metabolic process IEP Enrichment
BP GO:1901566 organonitrogen compound biosynthetic process IEP Enrichment
BP GO:1901576 organic substance biosynthetic process IEP Enrichment
BP GO:1903509 liposaccharide metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR022571 Mg_chelatase_H_N 24 186
IPR003672 CobN/Mg_chltase 190 1322
No external refs found!