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  5. TP01G02020.1

TP01G02020.1


Description : ATPase, AAA-type, core; CDC48, domain 2; AAA ATPase, AAA+ lid domain; CDC48, N-terminal subdomain [Interproscan].


Gene families : OG_01_0000083 (OrthoFinder) Phylogenetic Tree(s): OG0000083_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: TP01G02020.1
Cluster HCCA: Cluster_2

Target Alias Description ECC score Gene Family Method Actions
Cz09g19130.t1 No alias AAA ATPase, AAA+ lid domain; ATPase, AAA-type, core;... 0.05 OrthoFinder
Dusal.0008s00033.1 33198881 ATPase, AAA-type, core; AAA ATPase, AAA+ lid domain... 0.01 OrthoFinder
Dusal.0191s00006.1 33186464 ATPase, AAA-type, core; AAA ATPase, AAA+ lid domain;... 0.02 OrthoFinder
EOD03933 No alias Cell division cycle protein 48 [Ensembl]. 0.04 OrthoFinder
EOD26464 No alias Cell division cycle protein 48 [Ensembl]. 0.02 OrthoFinder
OT_01G03790.1 No alias AAA ATPase, AAA+ lid domain; Vps4 oligomerisation,... 0.04 OrthoFinder
PTI_11G01980.1 No alias AAA ATPase, AAA+ lid domain; CDC48, N-terminal... 0.24 OrthoFinder
Sro287_g108550.1 Contig252.g3096 Transitional endoplasmic reticulum ATPase 0.12 OrthoFinder
Transcript_contig_54277 54277 CDC48, N-terminal subdomain; AAA ATPase, AAA+ lid... 0.01 OrthoFinder
lcl|BLLF01002883.1_cds_GFH25671.1_20148 HaLaN_23672, GFH25671 Spastin 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003684 damaged DNA binding IEP Enrichment
MF GO:0003824 catalytic activity IEP Enrichment
MF GO:0004175 endopeptidase activity IEP Enrichment
MF GO:0004298 threonine-type endopeptidase activity IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
CC GO:0005839 proteasome core complex IEP Enrichment
BP GO:0006508 proteolysis IEP Enrichment
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
MF GO:0008233 peptidase activity IEP Enrichment
CC GO:0008537 proteasome activator complex IEP Enrichment
BP GO:0009056 catabolic process IEP Enrichment
BP GO:0009057 macromolecule catabolic process IEP Enrichment
BP GO:0009166 nucleotide catabolic process IEP Enrichment
MF GO:0016787 hydrolase activity IEP Enrichment
BP GO:0019538 protein metabolic process IEP Enrichment
CC GO:0019773 proteasome core complex, alpha-subunit complex IEP Enrichment
MF GO:0019900 kinase binding IEP Enrichment
MF GO:0019901 protein kinase binding IEP Enrichment
BP GO:0019941 modification-dependent protein catabolic process IEP Enrichment
CC GO:0032991 protein-containing complex IEP Enrichment
BP GO:0034404 nucleobase-containing small molecule biosynthetic process IEP Enrichment
BP GO:0034655 nucleobase-containing compound catabolic process IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
BP GO:0043632 modification-dependent macromolecule catabolic process IEP Enrichment
BP GO:0044238 primary metabolic process IEP Enrichment
BP GO:0044248 cellular catabolic process IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
BP GO:0044265 cellular macromolecule catabolic process IEP Enrichment
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEP Enrichment
MF GO:0070003 threonine-type peptidase activity IEP Enrichment
BP GO:0071704 organic substance metabolic process IEP Enrichment
MF GO:0140096 catalytic activity, acting on a protein IEP Enrichment
BP GO:1901292 nucleoside phosphate catabolic process IEP Enrichment
BP GO:1901564 organonitrogen compound metabolic process IEP Enrichment
BP GO:1901575 organic substance catabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR004201 Cdc48_dom2 126 189
IPR003338 CDC4_N-term_subdom 24 104
IPR003959 ATPase_AAA_core 512 644
IPR003959 ATPase_AAA_core 239 368
IPR041569 AAA_lid_3 391 434
IPR041569 AAA_lid_3 668 706
No external refs found!