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  5. TP01G00520.1

TP01G00520.1


Description : G-patch domain [Interproscan].


Gene families : OG_01_0002250 (OrthoFinder) Phylogenetic Tree(s): OG0002250_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: TP01G00520.1
Cluster HCCA: Cluster_21

Target Alias Description ECC score Gene Family Method Actions
Cre07.g347400 30774277 Protein biosynthesis.cytosolic ribosome.large subunit... 0.02 OrthoFinder
Cz02g35040.t1 No alias G-patch domain [Interproscan]. 0.03 OrthoFinder
OT_01G03500.1 No alias G-patch domain [Interproscan]. 0.06 OrthoFinder
PTI_04G04430.1 No alias G-patch domain [Interproscan]. 0.02 OrthoFinder
Sro650_g181440.1 Contig647.g7760 PIN2/TERF1-interacting telomerase inhibitor 1 0.15 OrthoFinder
Transcript_contig_54158 54158 G-patch domain [Interproscan]. 0.02 OrthoFinder
Vocar.0005s0050.1 32884038 G-patch domain [Interproscan]. 0.02 OrthoFinder
lcl|BLLF01000174.1_cds_GFH08637.1_3114 HaLaN_03626, GFH08637 G-patch domain-containing protein 0.03 OrthoFinder
lcl|LHPG02000003.1_cds_PRW60174.1_6320 PRW60174 D111 G-patch domain-containing family 0.04 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003725 double-stranded RNA binding IEP Enrichment
MF GO:0004674 protein serine/threonine kinase activity IEP Enrichment
MF GO:0005525 GTP binding IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006399 tRNA metabolic process IEP Enrichment
BP GO:0008033 tRNA processing IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP Enrichment
MF GO:0017150 tRNA dihydrouridine synthase activity IEP Enrichment
MF GO:0019001 guanyl nucleotide binding IEP Enrichment
CC GO:0030684 preribosome IEP Enrichment
CC GO:0032040 small-subunit processome IEP Enrichment
MF GO:0032561 guanyl ribonucleotide binding IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
MF GO:0050660 flavin adenine dinucleotide binding IEP Enrichment
MF GO:0051082 unfolded protein binding IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
MF GO:0140101 catalytic activity, acting on a tRNA IEP Enrichment
InterPro domains Description Start Stop
IPR000467 G_patch_dom 19 63
No external refs found!