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  5. Sro9_g007570.1

Sro9_g007570.1 (Contig4120.g31525)


Aliases : Contig4120.g31525

Description : AP-1 complex subunit sigma


Gene families : OG_01_0000426 (OrthoFinder) Phylogenetic Tree(s): OG0000426_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sro9_g007570.1
Cluster HCCA: Cluster_216

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00001003.32 tig00001003_g6287.t1 Vesicle trafficking.clathrin coated vesicle (CCV)... 0.02 OrthoFinder
Cre07.g324600 30775415, AP2S2 Vesicle trafficking.clathrin coated vesicle (CCV)... 0.03 OrthoFinder
Cre07.g330950 30774543, AP4S4 Vesicle trafficking.endomembrane trafficking.vacuolar... 0.03 OrthoFinder
Cre09.g394100 30781425, AP1S1 Vesicle trafficking.clathrin coated vesicle (CCV)... 0.04 OrthoFinder
Cz17g12080.t1 No alias AP complex, mu/sigma subunit [Interproscan]. 0.01 OrthoFinder
Dusal.0133s00027.1 33199133 AP complex, mu/sigma subunit [Interproscan]. 0.01 OrthoFinder
EOD06805 No alias Aps1, sigma subunit of the adaptin 1 complex [Ensembl]. 0.04 OrthoFinder
EOD24106 No alias Adaptor protein 2 sigma subunit [Ensembl]. 0.03 OrthoFinder
EOD33030 No alias Adaptor protein 2 sigma subunit [Ensembl]. 0.03 OrthoFinder
EOD33031 No alias Adaptor protein 2 sigma subunit [Ensembl]. 0.03 OrthoFinder
OT_10G02560.1 No alias AP complex, mu/sigma subunit [Interproscan]. 0.03 OrthoFinder
PTI_13G00760.1 No alias AP complex, mu/sigma subunit [Interproscan]. 0.01 OrthoFinder
PTI_18G01760.1 No alias AP complex, mu/sigma subunit [Interproscan]. 0.01 OrthoFinder
TP04G02440.1 No alias AP complex, mu/sigma subunit [Interproscan]. 0.02 OrthoFinder
TP05G06610.1 No alias AP complex, mu/sigma subunit [Interproscan]. 0.03 OrthoFinder
Transcript_contig_55878 55878 AP complex, mu/sigma subunit [Interproscan]. 0.01 OrthoFinder
Vocar.0003s0186.1 32888981 AP complex, mu/sigma subunit [Interproscan]. 0.02 OrthoFinder
Vocar.0008s0209.1 32897370 AP complex, mu/sigma subunit [Interproscan]. 0.02 OrthoFinder
XM_003055645.1 MicpuC2_24442, 24442 AP complex, mu/sigma subunit [Interproscan]. 0.01 OrthoFinder
XM_003061069.1 MicpuC2_45744, 45744 AP complex, mu/sigma subunit [Interproscan]. 0.01 OrthoFinder
lcl|BLLF01002367.1_cds_GFH23805.1_18282 HaLaN_21486, GFH23805 AP complex subunit sigma 0.01 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8499113.1_8066 KAA8499113 AP-1 complex subunit sigma-2 0.01 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Enrichment
MF GO:0003743 translation initiation factor activity IEP Enrichment
MF GO:0003916 DNA topoisomerase activity IEP Enrichment
MF GO:0003917 DNA topoisomerase type I (single strand cut, ATP-independent) activity IEP Enrichment
MF GO:0004843 thiol-dependent deubiquitinase IEP Enrichment
MF GO:0005048 signal sequence binding IEP Enrichment
MF GO:0005488 binding IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
MF GO:0005525 GTP binding IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
CC GO:0005875 microtubule associated complex IEP Enrichment
BP GO:0006265 DNA topological change IEP Enrichment
BP GO:0006352 DNA-templated transcription, initiation IEP Enrichment
BP GO:0006413 translational initiation IEP Enrichment
BP GO:0006621 protein retention in ER lumen IEP Enrichment
BP GO:0006810 transport IEP Enrichment
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEP Enrichment
BP GO:0007021 tubulin complex assembly IEP Enrichment
BP GO:0007023 post-chaperonin tubulin folding pathway IEP Enrichment
BP GO:0008064 regulation of actin polymerization or depolymerization IEP Enrichment
MF GO:0008138 protein tyrosine/serine/threonine phosphatase activity IEP Enrichment
BP GO:0008150 biological_process IEP Enrichment
MF GO:0008242 omega peptidase activity IEP Enrichment
MF GO:0008270 zinc ion binding IEP Enrichment
CC GO:0008290 F-actin capping protein complex IEP Enrichment
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP Enrichment
BP GO:0009116 nucleoside metabolic process IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
BP GO:0010639 negative regulation of organelle organization IEP Enrichment
BP GO:0016043 cellular component organization IEP Enrichment
BP GO:0016192 vesicle-mediated transport IEP Enrichment
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP Enrichment
MF GO:0019001 guanyl nucleotide binding IEP Enrichment
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Enrichment
BP GO:0022607 cellular component assembly IEP Enrichment
BP GO:0030001 metal ion transport IEP Enrichment
CC GO:0030286 dynein complex IEP Enrichment
BP GO:0030832 regulation of actin filament length IEP Enrichment
BP GO:0030833 regulation of actin filament polymerization IEP Enrichment
BP GO:0030834 regulation of actin filament depolymerization IEP Enrichment
BP GO:0030835 negative regulation of actin filament depolymerization IEP Enrichment
BP GO:0030837 negative regulation of actin filament polymerization IEP Enrichment
CC GO:0030880 RNA polymerase complex IEP Enrichment
BP GO:0031333 negative regulation of protein-containing complex assembly IEP Enrichment
BP GO:0032271 regulation of protein polymerization IEP Enrichment
BP GO:0032272 negative regulation of protein polymerization IEP Enrichment
BP GO:0032507 maintenance of protein location in cell IEP Enrichment
BP GO:0032535 regulation of cellular component size IEP Enrichment
MF GO:0032561 guanyl ribonucleotide binding IEP Enrichment
BP GO:0032774 RNA biosynthetic process IEP Enrichment
BP GO:0032956 regulation of actin cytoskeleton organization IEP Enrichment
BP GO:0032970 regulation of actin filament-based process IEP Enrichment
CC GO:0032991 protein-containing complex IEP Enrichment
BP GO:0033043 regulation of organelle organization IEP Enrichment
MF GO:0033218 amide binding IEP Enrichment
BP GO:0034622 cellular protein-containing complex assembly IEP Enrichment
BP GO:0035437 maintenance of protein localization in endoplasmic reticulum IEP Enrichment
MF GO:0042277 peptide binding IEP Enrichment
BP GO:0043242 negative regulation of protein-containing complex disassembly IEP Enrichment
BP GO:0043244 regulation of protein-containing complex disassembly IEP Enrichment
BP GO:0043254 regulation of protein-containing complex assembly IEP Enrichment
BP GO:0043933 protein-containing complex subunit organization IEP Enrichment
BP GO:0044087 regulation of cellular component biogenesis IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0045185 maintenance of protein location IEP Enrichment
BP GO:0046907 intracellular transport IEP Enrichment
MF GO:0046923 ER retention sequence binding IEP Enrichment
BP GO:0048193 Golgi vesicle transport IEP Enrichment
MF GO:0048487 beta-tubulin binding IEP Enrichment
BP GO:0048519 negative regulation of biological process IEP Enrichment
BP GO:0048523 negative regulation of cellular process IEP Enrichment
BP GO:0051016 barbed-end actin filament capping IEP Enrichment
BP GO:0051128 regulation of cellular component organization IEP Enrichment
BP GO:0051129 negative regulation of cellular component organization IEP Enrichment
BP GO:0051179 localization IEP Enrichment
BP GO:0051234 establishment of localization IEP Enrichment
BP GO:0051235 maintenance of location IEP Enrichment
BP GO:0051493 regulation of cytoskeleton organization IEP Enrichment
BP GO:0051494 negative regulation of cytoskeleton organization IEP Enrichment
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEP Enrichment
BP GO:0051641 cellular localization IEP Enrichment
BP GO:0051649 establishment of localization in cell IEP Enrichment
BP GO:0051651 maintenance of location in cell IEP Enrichment
BP GO:0051693 actin filament capping IEP Enrichment
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP Enrichment
BP GO:0065003 protein-containing complex assembly IEP Enrichment
BP GO:0070070 proton-transporting V-type ATPase complex assembly IEP Enrichment
BP GO:0070071 proton-transporting two-sector ATPase complex assembly IEP Enrichment
BP GO:0070072 vacuolar proton-transporting V-type ATPase complex assembly IEP Enrichment
BP GO:0071103 DNA conformation change IEP Enrichment
BP GO:0071840 cellular component organization or biogenesis IEP Enrichment
CC GO:0072546 EMC complex IEP Enrichment
BP GO:0072595 maintenance of protein localization in organelle IEP Enrichment
BP GO:0090066 regulation of anatomical structure size IEP Enrichment
MF GO:0101005 deubiquitinase activity IEP Enrichment
BP GO:0110053 regulation of actin filament organization IEP Enrichment
MF GO:0140096 catalytic activity, acting on a protein IEP Enrichment
CC GO:0140534 endoplasmic reticulum protein-containing complex IEP Enrichment
BP GO:1901657 glycosyl compound metabolic process IEP Enrichment
BP GO:1901879 regulation of protein depolymerization IEP Enrichment
BP GO:1901880 negative regulation of protein depolymerization IEP Enrichment
CC GO:1902494 catalytic complex IEP Enrichment
BP GO:1902903 regulation of supramolecular fiber organization IEP Enrichment
BP GO:1902904 negative regulation of supramolecular fiber organization IEP Enrichment
InterPro domains Description Start Stop
IPR022775 AP_mu_sigma_su 1 147
No external refs found!